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Table 2 Results of the Mantel statistic (x) and the haplotype-based X2hap – test for main effects

From: Haplotype-sharing analysis using Mantel statistics for combined genetic effects

Sample

M0(x)

X 2 hap

Permutation test global

 

Nearest marker (p-value)

Marker with lowest p-value (p-value)

Nearest marker

Marker with lowest p-value (p-value)

 

Chromosome 1

A

C01R0052 (0.778)

C01R0054 (0.273)

C01R0052 (0.648)

C01R0047 (0.159)

0.41

B

C01R0052 (0.042)

C01R0052 (0.042)

(NDa)

(NDa)

0.09

C

C01R0052 (0.579)

C01R0046 (0.054)

C01R0052 (0.471)

C01R0045 (0.31)

0.81

D

C01R0052 (0.068)

C01R0045 (0.014)

C01R0052 (0.095)

C01R0052 (0.095)

0.03

Chromosome 3

E

C03R0281 (0.134)

C03R0281 (0.134)

C03R0280b (0.668)

C03R0279 (0.629)

0.68

F

C03R0281 (0.043)

C03R0280 (0.002)

C03R0280b (0.11)

C03R0279 (0.09)

0.15

  1. Presented are p-values for the nearest markers of the candidate genes (D1: C01R0052; D2: C03R0281) and the marker with the lowest p-value.
  2. aX2hap-test was not performed for data including microsatellites.
  3. bNo p-value is assigned to the marginal genetic markers.