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Table 2 Maximal LOD scores for loci with increased allele sharing at p < 0.05.

From: Genome-wide linkage analysis for alcohol dependence: a comparison between single-nucleotide polymorphism and microsatellite marker assays

 

ALDX1 LOD (p)

ALDX2 LOD (p)

 

Affymetrix

Illumina

Microsatellites

Affymetrix

Illumina

Microsatellites

 

LD

No LD

     

Chr 2 (2p25)

1.38 (0.005)

1.28 (0.007)

1.84 (0.002)

1.19 (0.009)

0.65 (0.04)

1.11 (0.01)

0.79 (0.03)

Chr 2 (2q13)

1.88 (0.002)

1.75 (0.002)

1.26 (0.008)

0.94 (0.02)

1.16 (0.01)

0.78 (0.03)

1.17 (0.01)

Chr 3 (3p21)

1.18 (0.01)

1.24 (0.008)

1.30 (0.007)

0.47 (0.07)

1.10 (0.01)

0.95 (0.02)

0.66 (0.04)

Chr 6 (6p24)

1.26 (0.008)

1.07 (0.01)

1.25 (0.008)

0.65 (0.04)

1.57 (0.003)

1.17 (0.01)

0.12 (0.2)

Chr 6 (6q27)

0.79 (0.03)

0.65 (0.04)

2.41 (0.0004)

-

0.95 (0.02)

2.08 (0.001)

-

Chr 7 (7p21)

1.69 (0.002)

1.64 (0.003)

1.15 (0.01)

1.16 (0.01)

1.84 (0.002)

1.40 (0.005)

1.01 (0.01)

Chr 9 (9q34)

0.90 (0.02)

0.81 (0.03)

1.17 (0.01)

0.28 (0.1)

1.53 (0.004)

1.72 (0.002)

0.08 (0.3)

Chr 10 (10q24)

1.02 (0.01)

0.62 (0.04)

1.21 (0.009)

0.91 (0.02)

1.83 (0.002)

2.43 (0.0004)

0.90 (0.02)

Chr 10 (10q26)

1.58 (0.003)

1.35 (0.007)

1.43 (0.005)

0.96 (0.02)

1.23 (0.008)

1.47 (0.004)

0.71 (0.03)

Chr 12 (12q24)

1.55 (0.004)

1.00 (0.02)

1.24 (0.008)

1.56 (0.004)

1.57 (0.003)

1.33 (0.006)

1.71 (0.002)

Chr 21 (21q22)

0.28 (0.1)

0.20 (0.2)

0.28 (0.1)

1.77 (0.002)

0.29 (0.1)

0.13 (0.2)

1.09 (0.01)

Chr X (xp22)

2.22 (0.0007)

-

2.17 (0.0007)

0.43 (0.08)

0.74 (0.03)

0.80 (0.03)

0.07 (0.3)