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Table 1 Frequency of population-based and family-based haplotypes using 14 Illumina SNPs with low LD

From: Accuracy of haplotype estimation in a region of low linkage disequilibrium

  5-SNP Haplotype Frequencies
Haplotype MERLIN PHASE HAPLO.STATS
22212 0.2188 0.225 0.2375
12212 0.1375 0.1438 0.1438
22121 0.125 0.0688 0.075
12121 0.1125 0.1563 0.1625
11121 0.0813 0.0938 0.0875
21121 0.0688 0.0688 0.0625
21212 0.05 0.075 0.0625
11212 0.0438 0.0063 0.0063
22222 0.0438 0.0438 0.0438
11222 0.0188 0.0313 0.0313
12222 0.0188 - -
21211 0.0188 - 0.0188
22211 0.0188 0.0438 0.025
12122 0.0125 - -
12211 0.0125 - -
22221 0.0125 0.0188 0.0188
12221 0.0063 - -
22111 0.0063 0.0063 -
22122 -a 0.0125 0.0125
11221 - 0.0063 0.0063
21111 - - 0.0063
  1. a -, not applicable.