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Table 1 Linkage results using the Illumina Linkage III SNP Panel and the Affymetrix 10 k Mapping Array.

From: Evaluation of linkage disequilibrium and its effect on non-parametric multipoint linkage analysis using two high density single-nucleotide polymorphism mapping panels

 

Illumina III SNP linkage panel

Affymetrix 10 k mapping array

Chr

Marker

Position (cM)

Build34 bp

NPL

p-value

IC

Marker

Position (cM)

Build34 bp

NPL

p-value

IC

2p25

rs1025053

16.1

8238143

2.53

0.0073

0.89

tsc0041232

5.74

2888794

2.71

0.0047

0.91

2p25

rs1025053

16.1

8238143

2.64

0.0056

0.90

tsc0041232

5.74

2888794

2.43

0.0095

0.91

2p14

rs1000756

89.9

66769368

3.31

0.00090

0.93

tsc1090282

90.58

67905612

3.82

0.00019

0.94

2p14

rs1106577

89.9

67023129

3.26

0.0010

0.93

tsc1090282

90.58

67905612

3.80

0.00021

0.94

2q37

rs1453867

239.2

233120438

2.39

0.010

0.93

tsc0524987

244.44

236010878

2.71

0.0046

0.89

2q37

rs1453867

239.2

233120438

2.38

0.010

0.93

tsc0524987

244.44

236010878

2.68

0.0051

0.89

6q27

rs760909

188.1

170713389

3.46

0.00058

0.86

tsc0050465

185.42

multiple pos.

1.85

0.035

0.81

6q27

rs727619

188.1

170562703

2.79

0.0037

0.88

tsc0050465

185.42

multiple pos.

1.77

0.041

0.81

7p22-21

rs1057558

0

806704

2.62

0.0058

0.89

tsc1592599

31.68

17610703

2.55

0.0070

0.94

7p22-21

rs1127460

0

623105

2.35

0.011

0.89

tsc0925001

31.35

17305065

2.42

0.0096

0.93

7q21

rs1023564

101.1

88453743

2.54

0.0071

0.94

tsc0049271

101.05

89624115

2.77

0.0039

0.94

7q21

rs717474

101.1

88403326

2.54

0.0072

0.94

tsc1240889

99.05

85964828

2.82

0.0035

0.94

10q26

rs1536087

159.6

131394560

2.90

0.0028

0.90

tsc0960887

171.41

132054567

3.25

0.0011

0.88

10q26

rs1536087

159.6

131394560

2.92

0.0027

0.90

tsc0960887

171.41

132054567

3.03

0.0020

0.87

11q23

rs617847

126.1

120940295

2.65

0.0054

0.90

tsc0053512

125.27

121196164

2.82

0.0035

0.92

11q23

rs575030

125.1

120630050

2.57

0.0066

0.91

tsc0051264

125.15

121112747

2.51

0.0076

0.92

Xp22

rs225031

39.7

28452585

2.34

0.011

0.93

tsc0038428

42.78

25961925

2.55

0.0071

0.97

Xp22

rs795489

34.4

23062119

2.89

0.0030

0.88

tsc0038428

42.78

25961925

2.68

0.0053

0.94

  1. aPeak loci p < 0.01 for all loci (bold) and loci r2 < 0.40 (not bold)1