Table 2 Five most powerful SNPs on Chromosome 4. The five SNPs with the highest estimated power by PBAT screening on chromosome 4, and their corresponding p-values. Corresponding MERLIN LOD scores are also reported.
From: Comparison of linkage and association strategies for quantitative traits using the COGA dataset
SNP | Allele | Allele Frequency | No. of Uninformative Families | Power | p-value (PBAT) | LOD (MERLIN) |
|---|---|---|---|---|---|---|
TSC0750487 | 2 | 0.33 | 110 | 0.96 | 0.0081 | 0.00 |
TSC0568024 | 1 | 0.33 | 111 | 0.95 | 0.0085 | 0.00 |
TSC0313521 | 2 | 0.11 | 117 | 0.94 | 0.1290 | 0.61 |
TSC0652507 | 1 | 0.34 | 115 | 0.94 | 0.9390 | 0.40 |
TSC0528071 | 1 | 0.30 | 115 | 0.93 | 0.0828 | 0.33 |