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Table 1 Six new nuclear loci for each of two Collembola species. Markers were developed using four PCR-based methods (labeled A-D) in conjunction with SSCP plus DNA sequencing. Pseud., Pseudachorutinae n. sp.; Acanth., Acanthanura n. sp.

From: Development and application of three-tiered nuclear genetic markers for basal Hexapods using single-stranded conformation polymorphism coupled with targeted DNA sequencing

Taxon/locus

Primer

Sequence (5' to 3')

Gene amplified

Method

Source of primers used for initial amplification (primer names)

Pseud.

     

Sm2

Sm2-Fa

GAAACGGGTGCTGGTTSRAGG

Anon. nDNA

A

Operon Technologies (A07, A09)

 

Sm2-R

GGGTAACGCCRTTGGAAACAG

   

Sm4

Sm4-F

GAATTGGTGGGAGATCTCTC

Anon. nDNA

C

[2] (ATPSα f1, ATPSα r1)

 

Sm4-R

TGTCGTCCGTCTATGATTCG

   

Sm6

Sm6-F

CTGAATGCCGTCGAAACGTAAAC

Anon. nDNA

B

[57] (M49-F), [58] (myz3-R)

 

Sm6-R

GTTGGTTTACCTGTTTTAAATG

   

Sm8

Sm8-F

AGTGGGATTTTAGGATGGCAGG

Anon. nDNA

A/B

[57] (M49-F), Operon Technologies (A07)

 

Sm8-R

CCAAGACTAAGATTGAGAAGAAGTC

   

SmEF-1α

UcEF-Fa

see below

EF-1α intron

C

This study (UcEF-F), [1] (EF2)

 

SmEF-R

CCAATMCCACCAATTTTGTAGAC

   

Sm150

Sm150-F

ATCCTACTCAAAACTCAAG

Anon. nDNA

D

Not applicable

 

Sm150-R

ACCCTTGGATTTGGAATC

   

Acanth.

     

Uc3

Uc3-Fa

CAGCGCGGTTTGGGTGTATA

Anon. nDNA

A

Operon Technologies (A07, A10)

 

Uc3-R

GTGATCGCAGAAATCCCCGCA

   

Uc180

Uc180-Fa

CCAACTCAAGTTCGGATGAC

Anon. nDNA

D

Not applicable

 

Uc180-R

CAAAGCGCTTAACTGGGTC

   

Uc44

Uc44-F

GATTATTACCAATCGCTATTGG

Anon. nDNA

A

Operon Technologies (A07, A09)

 

Uc44-R

GGGTAACGCCAATTTAAGGTG

   

UcEF-1α

UcEF-Fa

CCGAGAAGATGTCCTGGTTC

EF-1α intron

C

[1] (EF0, EF2)

 

UcEF-R

CGGGCACTGTTCCAATCC

   

UcANT

UcANT-F

CAGTGTCTCMGTKCAAGGAATC

ANT intron

C

[2] (ANTf1, ANTr1)

 

UcANT-R

MTTGGGCGATWAKCCAKGAAAC

   

UcWnt

UcWnt-F

AGAATAAGTTCCGTCGTGCTG

Wnt

C

[59] (wg1a, wg2a)

 

UcWnt-R

GGATTGGAGTCGCAGTAGGTC

   
  1. aPrimer used for sequencing.