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Table 1 Microsatellite markers selected for mapping the s locus.

From: Mapping of panda plumage color locus on the microsatellite linkage map of the Japanese quail

  

Japanese quail

Chicken

    

Nucleotide similarity between Japanese quail and chicken (%)

   

Locus

Marker origin

GenBank accession number

TA

(°C)

5' flank

3' flank

GenBank accession number

References

Map position in the draft sequence of GGA4 (bp)

ADL0255

Chicken (GGA4)

AB038396

58

83 (71 nt)

100 (22 nt)

G01675

[17] [19]

2,088,640 – 2,089,022

GUJ0026

Quail (CJA04)

AB035836

60

91(87 nt)

90 (50 nt)

-

[26] [27]

10,067,404 – 10,067,587

ABR0544

Chicken (GGA4)

AB220928

55

89(108 nt)

93(107 nt)

AB186688

[18]

14,275,721 – 14,276,511

ADL0266

Chicken (GGA4)

AB220927

50

93 (15 nt)

89(25 nt)

G01686

[17] [18]

45,879,485 – 45,879,848

GUJ0074

Quail (CJA04)

AB063142

59

93 (253 nt)

83 (24 nt)

-

[27]

49,116,133 – 49,116,445

  1. Nucleotide similarities of two original Japanese quail markers (GUJ0026 and GUJ0074) were calculated by BLAT search against the chicken draft genome sequence. Nucleotide similarities of three original chicken markers (ADL0255, ABR0544 and ADL0266) were calculated between the GenBank chicken sequence and quail sequence.