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Table 1 Number of SNPs selected by the different methods

From: Selection of SNP subsets for association studies in candidate genes: comparison of the power of different strategies to detect single disease susceptibility locus effects

 

Number of SNPs selected

 

Method I (Johnson et al.)

Method II (Stram et al.)

Method III (Cousin et al.)

Method IV 0.5 (Carlson et al.)

Method IV 0.8 (Carlson et al.)

C3AR1 – 21 SNPs -

8

21

10

11

11

CCR2 – 22 SNPs -

5

8

10

9

10

CEBPB – 10 SNPs -

5

5

4

5

6

CSF2 – 17 SNPs -

6

9

9

8

9

FCN3 – 14 SNPs -

8

10

10

10

10

FGL2 – 6 SNPs -

4

4

4

4

4

IFNG – 13 SNPs -

8

13

9

7

9

IL13 – 16 SNPs -

6

11

11

10

11

IL24 – 24 SNPs -

7

11

8

11

11

IL9 – 14 SNPs -

6

7

6

6

7

LTA – 19 SNPs -

8

11

9

8

12

LTB – 7 SNPs -

4

6

6

6

6

MC1R – 22 SNPs -

7

10

6

9

14

PLAU – 23 SNPs -

6

9

4

8

10

PROCR – 13 SNPs -

6

6

6

6

6

RELA – 12 SNPs -

5

6

7

7

7

SERPINC1 – 27 SNPs -

6

13

6

7

9

TNF – 12 SNPs -

4

5

3

4

6

TRADD – 11 SNPs -

5

8

8

7

7

VTN – 15 SNPs -

5

6

2

5

6