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Table 1 Comparison of results of affected sib pair test (ASP) and transmission disequilibrium test (TDT). The chromosome positions and single-point levels of significance are shown for all significant markers in the genome scan. The significant p-values (1%) are in bold.

From: Genome-wide linkage analysis of inguinal hernia in pigs using affected sib pairs

Chromosome

Marker

Position (cM)

P-value, ASP

P-value, TDT

SSC1

SW1515

0

0.05

0.07

 

SW1332

20

0.05

0.005

 

S0331

60

0.05

0.05

SSC2

SW1686

45

0.01

0.23

 

SW834

65

0.001

0.86

 

SW2134

75

0.002

0.17

 

SWR2157

85

0.001

0.90

 

SWR308

125

0.01

0.06

SSC4

S0227

0

0.05

0.49

 

S0301

20

0.01

0.53

 

S0214

70

0.05

0.61

SSC5

SW963 *

80

0.01

0.005

SSC6

SW1355 *

60

0.11

0.0002

 

S0003

80

0.05

0.18

SSC7

TNFB

55

0.05

0.10

 

S0212

135

0.05

0.05

SSC12

SW2180

105

0.05

0.18

SSC13

S0223

60

0.01

0.40

 

S0075

65

0.01

0.93

SSC15

SW919

20

0.001

0.02

 

SW1118

35

0.05

0.01

SSC17

SW1891

0

0.01

0.01

 

SWR1120

10

0.05

0.74

 

SW2441

25

0.05

0.11

 

S0332

70

0.05

0.01

SSC18

SW1984

30

0.05

0.17

 

SW1682

45

0.01

0.72

SSCX

SW1522

50

0.006

0.28

 

SW259

70

0.003

0.53

  1. * Markers with chromosomewise significance of p < 0.01 from the TDT analyses