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Table 2 Counts used as input for TDT, with results from single-allele TDT. The counts are the number of times that an allele was transmitted/not transmitted from a heterozygous parent carrying that allele to a hernia affected/not affected offspring. Nominal significance levels were used.

From: Genome-wide linkage analysis of inguinal hernia in pigs using affected sib pairs

Chromosome Marker Allele Affected Resistant TDT P-value
    Transmit. Not transmit. Transmit. Not transmit.   
SSC1 S0331 1 49 14 27 20 7.13 0.007
   2 10 25 11 13 2.86 0.09
   3 13 25 10 15 0.78 0.38
   4 0 8 2 2 5.33 0.02
   5 4 4 3 3 0.00 1.00
  SW1332 1 22 35 7 23 0.10 0.75
   2 54 24 25 16 3.71 0.05
   3 1 14 5 2 11.64 0.0006
   4 1 5 4 0 6.40 0.011
SSC5 SW963 1 53 25 13 25 13.79 0.0002
   2 8 10 3 7 0.14 0.70
   3 27 37 17 10 3.18 0.07
   4 27 35 19 14 1.78 0.18
   5 8 10 7 1 2.46 0.12
   6 1 5 1 3 0.40 0.53
   7 0 2 1 1 1.00 0.32
SSC6 SW1355 1 48 70 48 19 14.06 0.0002
   2 16 14 1 17 6.75 0.009
   3 41 35 18 21 0.70 0.40
   4 38 24 12 22 6.00 0.01
SSC7 S0212 1 9 11 8 7 0.26 0.61
   2 52 29 17 20 5.73 0.01
   3 1 12 0 7 0.80 0.37
   4 18 21 15 7 1.98 0.16
   5 25 33 18 12 2.23 0.14
   7 5 4 1 6 2.25 0.13
SSC15 SW1118 1 40 21 15 24 7.84 0.005
   2 11 16 8 7 0.86 0.35
   3 9 17 10 6 3.43 0.06
   4 2 9 3 3 2.88 0.09
   5 7 6 6 2 0.43 0.51
  SW919 1 52 35 13 27 7.57 0.006
   2 18 33 15 18 1.71 0.19
   3 37 35 32 7 4.77 0.03
   4 32 34 18 16 0.16 0.69
   5 8 10 0 10 2.29 0.13
   6 1 1 1 1 0.00 1.00
SSC17 S0332 1 24 31 14 12 1.00 0.32
   2 1 21 0 10 3.13 0.08
   4 30 42 15 34 0.40 0.52
   5 7 20 9 4 8.10 0.004
  SW1891 1 60 39 32 29 2.03 0.15
   2 27 41 28 7 11.89 0.0005
   3 19 24 9 20 0.50 0.48
   4 25 27 9 22 1.46 0.22