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Table 2 Counts used as input for TDT, with results from single-allele TDT. The counts are the number of times that an allele was transmitted/not transmitted from a heterozygous parent carrying that allele to a hernia affected/not affected offspring. Nominal significance levels were used.

From: Genome-wide linkage analysis of inguinal hernia in pigs using affected sib pairs

Chromosome

Marker

Allele

Affected

Resistant

TDT

P-value

   

Transmit.

Not transmit.

Transmit.

Not transmit.

  

SSC1

S0331

1

49

14

27

20

7.13

0.007

  

2

10

25

11

13

2.86

0.09

  

3

13

25

10

15

0.78

0.38

  

4

0

8

2

2

5.33

0.02

  

5

4

4

3

3

0.00

1.00

 

SW1332

1

22

35

7

23

0.10

0.75

  

2

54

24

25

16

3.71

0.05

  

3

1

14

5

2

11.64

0.0006

  

4

1

5

4

0

6.40

0.011

SSC5

SW963

1

53

25

13

25

13.79

0.0002

  

2

8

10

3

7

0.14

0.70

  

3

27

37

17

10

3.18

0.07

  

4

27

35

19

14

1.78

0.18

  

5

8

10

7

1

2.46

0.12

  

6

1

5

1

3

0.40

0.53

  

7

0

2

1

1

1.00

0.32

SSC6

SW1355

1

48

70

48

19

14.06

0.0002

  

2

16

14

1

17

6.75

0.009

  

3

41

35

18

21

0.70

0.40

  

4

38

24

12

22

6.00

0.01

SSC7

S0212

1

9

11

8

7

0.26

0.61

  

2

52

29

17

20

5.73

0.01

  

3

1

12

0

7

0.80

0.37

  

4

18

21

15

7

1.98

0.16

  

5

25

33

18

12

2.23

0.14

  

7

5

4

1

6

2.25

0.13

SSC15

SW1118

1

40

21

15

24

7.84

0.005

  

2

11

16

8

7

0.86

0.35

  

3

9

17

10

6

3.43

0.06

  

4

2

9

3

3

2.88

0.09

  

5

7

6

6

2

0.43

0.51

 

SW919

1

52

35

13

27

7.57

0.006

  

2

18

33

15

18

1.71

0.19

  

3

37

35

32

7

4.77

0.03

  

4

32

34

18

16

0.16

0.69

  

5

8

10

0

10

2.29

0.13

  

6

1

1

1

1

0.00

1.00

SSC17

S0332

1

24

31

14

12

1.00

0.32

  

2

1

21

0

10

3.13

0.08

  

4

30

42

15

34

0.40

0.52

  

5

7

20

9

4

8.10

0.004

 

SW1891

1

60

39

32

29

2.03

0.15

  

2

27

41

28

7

11.89

0.0005

  

3

19

24

9

20

0.50

0.48

  

4

25

27

9

22

1.46

0.22