Marker haplotype | Population frequency | Estimated frequency of haplotype in LD with trait locus | |
---|---|---|---|
 |  | SLINK/SUP | SIMLA |
1-1-1-1-1-1 | 0.5 | 0.463 | 0.461 |
1-1-1-1-1-2 | 0.25 | 0.305 | 0.308 |
1-1-1-1-2-2 | 0.125 | 0.115 | 0.116 |
1-1-1-2-2-2 | 0.0625 | 0.0592 | 0.0578 |
1-1-2-2-2-2 | 0.0312 | 0.0293 | 0.0292 |
1-2-2-2-2-2 | 0.0156 | 0.0143 | 0.0143 |
2-1-1-1-1-1 | 0.0078 | 0.00764 | 0.00716 |
2-2-1-1-1-1 | 0.0040 | 0.00352 | 0.00376 |
2-2-2-1-1-1 | 0.0020 | 0.00188 | 0.00208 |
2-2-2-2-1-1 | 0.0010 | 0.00048 | 0.00060 |
2-2-2-2-2-1 | 0.0005 | 0.00016 | 0.00008 |
2-2-2-2-2-2 | 0.0004 | 0.00001 | 0.00004 |