Skip to main content

Table 1 Performances of haplotyping methods on analyzing 500 randomly selected haplotype blocks of the 30 European mothers' genotypes on X-chromosome from the HapMap data.

From: Empirical vs Bayesian approach for estimating haplotypes from genotypes of unrelated individuals

Performances

Empirical Method

Bayesian Method

 

PL-EM

HPlus

PHASE

HAPLOTYPER*

Similarity Index

    

Mean

0.989

0.990

0.986

0.991

Median

1.0

1.0

1.0

1.0

Standard deviation

0.029

0.024

0.040

0.024

Range

(0.733, 1.0)

(0.833, 1.0)

(0.292,1.0)

(0.733,1.0)

Prediction Rate

    

Mean

0.989

0.990

0.990

0.991

Median

1.0

1.0

1.0

1.0

Standard deviation

0.029

0.025

0.040

0.025

Range

(0.733, 1.0)

(0.833, 1.0)

(0.283, 1.0)

(0.733, 1.0)

Running Time (in second)

98

20

9935

422

  1. *: HAPLOTYPER failed to resolve 18 of the 500 haplotype blocks.