TY - JOUR AU - Lander, E. S. AU - Linton, L. M. AU - Birren, B. AU - Nusbaum, C. AU - Zody, M. C. AU - Baldwin, J. AU - Devon, K. AU - Dewar, K. AU - Doyle, M. AU - FitzHugh, W. PY - 2001 DA - 2001// TI - Initial sequencing and analysis of the human genome JO - Nature VL - 409 UR - https://doi.org/10.1038/35057062 DO - 10.1038/35057062 ID - Lander2001 ER - TY - JOUR AU - Waterston, R. H. AU - Lindblad-Toh, K. AU - Birney, E. AU - Rogers, J. AU - Abril, J. F. AU - Agarwal, P. AU - Agarwala, R. AU - Ainscough, R. AU - Alexandersson, M. AU - An, P. PY - 2002 DA - 2002// TI - Initial sequencing and comparative analysis of the mouse genome JO - Nature VL - 420 UR - https://doi.org/10.1038/nature01262 DO - 10.1038/nature01262 ID - Waterston2002 ER - TY - JOUR AU - Makalowski, W. AU - Mitchell, G. A. AU - Labuda, D. PY - 1994 DA - 1994// TI - Alu sequences in the coding regions of mRNA: a source of protein variability JO - Trends Genet VL - 10 UR - https://doi.org/10.1016/0168-9525(94)90254-2 DO - 10.1016/0168-9525(94)90254-2 ID - Makalowski1994 ER - TY - JOUR AU - Brosius, J. AU - Gould, S. J. PY - 1992 DA - 1992// TI - On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA" JO - Proc Natl Acad Sci USA VL - 89 UR - https://doi.org/10.1073/pnas.89.22.10706 DO - 10.1073/pnas.89.22.10706 ID - Brosius1992 ER - TY - CHAP AU - Makalowski, W. ED - Maraia, R. ED - Landes, R. G. PY - 1995 DA - 1995// TI - SINEs as a genomic scrap yard: an essay on genomic evolution BT - The Impact of Short Interspersed Elements (SINEs) on the Host Genome ID - Makalowski1995 ER - TY - JOUR AU - Thornburg, B. G. AU - Gotea, V. AU - Makalowski, W. PY - 2006 DA - 2006// TI - Transposable elements as a significant source of transcription regulating signals JO - Gene VL - 365 UR - https://doi.org/10.1016/j.gene.2005.09.036 DO - 10.1016/j.gene.2005.09.036 ID - Thornburg2006 ER - TY - JOUR AU - Sela, N. AU - Mersch, B. AU - Gal-Mark, N. AU - Lev-Maor, G. AU - Hotz-Wagenblatt, A. AU - Ast, G. PY - 2007 DA - 2007// TI - Comparative Analysis of transposed element insertion within human and mouse genes reveals Alu's unique role in shaping the human transcriptome JO - Genome Biology VL - 8 UR - https://doi.org/10.1186/gb-2007-8-6-r127 DO - 10.1186/gb-2007-8-6-r127 ID - Sela2007 ER - TY - JOUR AU - Sorek, R. AU - Ast, G. AU - Graur, D. PY - 2002 DA - 2002// TI - Alu-containing exons are alternatively spliced JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.229302 DO - 10.1101/gr.229302 ID - Sorek2002 ER - TY - JOUR AU - Krull, M. AU - Petrusma, M. AU - Makalowski, W. AU - Brosius, J. AU - Schmitz, J. PY - 2007 DA - 2007// TI - Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs) JO - Genome Res VL - 17 UR - https://doi.org/10.1101/gr.6320607 DO - 10.1101/gr.6320607 ID - Krull2007 ER - TY - JOUR AU - Knebelmann, B. AU - Forestier, L. AU - Drouot, L. AU - Quinones, S. AU - Chuet, C. AU - Benessy, F. AU - Saus, J. AU - Antignac, C. PY - 1995 DA - 1995// TI - Splice-mediated insertion of an Alu sequence in the COL4A3 mRNA causing autosomal recessive Alport syndrome JO - Hum Mol Genet VL - 4 UR - https://doi.org/10.1093/hmg/4.4.675 DO - 10.1093/hmg/4.4.675 ID - Knebelmann1995 ER - TY - JOUR AU - Mitchell, G. A. AU - Labuda, D. AU - Fontaine, G. AU - Saudubray, J. M. AU - Bonnefont, J. P. AU - Lyonnet, S. AU - Brody, L. C. AU - Steel, G. AU - Obie, C. AU - Valle, D. PY - 1991 DA - 1991// TI - Splice-mediated insertion of an Alu sequence inactivates ornithine delta-aminotransferase: a role for Alu elements in human mutation JO - Proc Natl Acad Sci USA VL - 88 UR - https://doi.org/10.1073/pnas.88.3.815 DO - 10.1073/pnas.88.3.815 ID - Mitchell1991 ER - TY - JOUR AU - Vervoort, R. AU - Gitzelmann, R. AU - Lissens, W. AU - Liebaers, I. PY - 1998 DA - 1998// TI - A mutation (IVS8+0.6kbdelTC) creating a new donor splice site activates a cryptic exon in an Alu-element in intron 8 of the human beta-glucuronidase gene JO - Hum Genet VL - 103 ID - Vervoort1998 ER - TY - JOUR AU - Wallace, M. AU - Andersen, L. AU - Saulino, A. AU - Gregory, P. AU - Glover, T. AU - Collins, F. PY - 1991 DA - 1991// TI - A de novo Alu insertion results in neurofibromatosis type 1 JO - Nature VL - 353 UR - https://doi.org/10.1038/353864a0 DO - 10.1038/353864a0 ID - Wallace1991 ER - TY - JOUR AU - Modrek, B. AU - Lee, C. J. PY - 2003 DA - 2003// TI - Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss JO - Nat Genet VL - 34 UR - https://doi.org/10.1038/ng1159 DO - 10.1038/ng1159 ID - Modrek2003 ER - TY - JOUR AU - Ferlini, A. AU - Galié, N. AU - Merlini, L. AU - Sewry, C. AU - Branzi, A. AU - Muntoni, F. PY - 1998 DA - 1998// TI - A novel Alu-like element rearranged in the dystrophin gene causes a splicing mutation in a family with X-linked dilated cardiomyopathy JO - Am J Hum Genet VL - 63 UR - https://doi.org/10.1086/301952 DO - 10.1086/301952 ID - Ferlini1998 ER - TY - JOUR AU - Wang, Z. AU - Lo, H. S. AU - Yang, H. AU - Gere, S. AU - Hu, Y. AU - Buetow, K. H. AU - Lee, M. P. PY - 2003 DA - 2003// TI - Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer JO - Cancer Res VL - 63 ID - Wang2003 ER - TY - JOUR AU - Mola, G. AU - Vela, E. AU - Fernández-Figueras, M. T. AU - Isamat, M. AU - Muñoz-Mármol, A. M. PY - 2007 DA - 2007// TI - Exonization of Alu-generated splice variants in the survivin gene of human and non-human primates JO - J Mol Biol VL - 366 UR - https://doi.org/10.1016/j.jmb.2006.11.089 DO - 10.1016/j.jmb.2006.11.089 ID - Mola2007 ER - TY - STD TI - Hubbard TJP, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T: Ensembl 2007. Nucleic Acids Res. 2007, D610-D617. 10.1093/nar/gkl996. 35 Database ID - ref18 ER - TY - STD TI - Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA: The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 2006, D590-D598. 10.1093/nar/gkj144. 34 Database ID - ref19 ER - TY - JOUR AU - Boguski, M. S. AU - Lowe, T. M. AU - Tolstoshev, C. M. PY - 1993 DA - 1993// TI - dbEST-database for "expressed sequence tags" JO - Nat Genet VL - 4 UR - https://doi.org/10.1038/ng0893-332 DO - 10.1038/ng0893-332 ID - Boguski1993 ER - TY - STD TI - Kulikova T, Akhtar R, Aldebert P, Althorpe N, Andersson M, Baldwin A, Bates K, Bhattacharyya S, Bower L, Browne P, Castro M: EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Res. 2007, D16-D20. 10.1093/nar/gkl913. 35 Database ID - ref21 ER - TY - JOUR AU - Pan, Q. AU - Bakowski, M. A. AU - Morris, Q. AU - Zhang, W. AU - Frey, B. J. AU - Hughes, T. R. AU - Blencowe, B. J. PY - 2005 DA - 2005// TI - Alternative splicing of conserved exons is frequently species-specific in human and mouse JO - Trends Genet VL - 21 UR - https://doi.org/10.1016/j.tig.2004.12.004 DO - 10.1016/j.tig.2004.12.004 ID - Pan2005 ER - TY - JOUR AU - Xu, Q. AU - Modrek, B. AU - Lee, C. PY - 2002 DA - 2002// TI - Genome-wide detection of tissue-specific alternative splicing in the human transcriptome JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf492 DO - 10.1093/nar/gkf492 ID - Xu2002 ER - TY - JOUR AU - Xu, Q. AU - Lee, C. PY - 2003 DA - 2003// TI - Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg786 DO - 10.1093/nar/gkg786 ID - Xu2003 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - STD TI - RepeatMasker Home Page. [http://www.repeatmasker.org] UR - http://www.repeatmasker.org ID - ref26 ER - TY - JOUR AU - Jurka, J. PY - 2000 DA - 2000// TI - Repbase Update: a database and an electronic journal of repetitive elements JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(00)02093-X DO - 10.1016/S0168-9525(00)02093-X ID - Jurka2000 ER - TY - JOUR AU - Jurka, J. AU - Kapitonov, V. V. AU - Pavlicek, A. AU - Klonowski, P. AU - Kohany, O. AU - Walichiewicz, J. PY - 2005 DA - 2005// TI - Repbase Update, a database of eukaryotic repetitive elements JO - Cytogenet Genome Res VL - 110 UR - https://doi.org/10.1159/000084979 DO - 10.1159/000084979 ID - Jurka2005 ER - TY - JOUR AU - Smit, A. F. AU - Riggs, A. D. PY - 1995 DA - 1995// TI - MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation JO - Nucleic Acids Res VL - 23 UR - https://doi.org/10.1093/nar/23.1.98 DO - 10.1093/nar/23.1.98 ID - Smit1995 ER - TY - JOUR AU - Boeckmann, B. AU - Bairoch, A. AU - Apweiler, R. AU - Blatter, M. C. AU - Estreicher, A. AU - Gasteiger, E. AU - Martin, M. J. AU - Michoud, K. AU - O'Donovan, C. AU - Phan, I. AU - Pilbout, S. AU - Schneider, M. PY - 2003 DA - 2003// TI - The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg095 DO - 10.1093/nar/gkg095 ID - Boeckmann2003 ER - TY - STD TI - Online Mendelian Inheritance in Man, OMIM. [http://www.ncbi.nlm.nih.gov/omim/] UR - http://www.ncbi.nlm.nih.gov/omim/ ID - ref31 ER - TY - JOUR AU - Nosaka, K. AU - Onozuka, M. AU - Kakazu, N. AU - Hibi, S. AU - Nishimura, H. AU - Nishino, H. AU - Abe, T. PY - 2001 DA - 2001// TI - Isolation and characterization of a human thiamine pyrophosphokinase cDNA JO - Biochim Biophys Acta VL - 1517 UR - https://doi.org/10.1016/S0167-4781(00)00247-5 DO - 10.1016/S0167-4781(00)00247-5 ID - Nosaka2001 ER - TY - JOUR AU - Zhao, R. AU - Gao, F. AU - Goldman, I. D. PY - 2001 DA - 2001// TI - Molecular cloning of human thiamin pyrophosphokinase JO - Biochim Biophys Acta VL - 1517 UR - https://doi.org/10.1016/S0167-4781(00)00264-5 DO - 10.1016/S0167-4781(00)00264-5 ID - Zhao2001 ER - TY - JOUR AU - Kim, S. G. AU - Ahn, Y. C. AU - Yoon, J. H. AU - Kim, H. K. AU - Park, S. S. AU - Ahn, S. G. AU - Endou, H. AU - Kanai, Y. AU - Park, J. C. AU - Kim, D. K. PY - 2006 DA - 2006// TI - Expression of amino acid transporter LAT1 and 4F2hc in the healing process after the implantation of a tooth ash and plaster of Paris mixture JO - In Vivo VL - 20 ID - Kim2006 ER - TY - JOUR AU - Okajima, T. AU - Chen, H. H. AU - Ito, H. AU - Kiso, M. AU - Tai, T. AU - Furukawa, K. AU - Urano, T. AU - Furukawa, K. PY - 2000 DA - 2000// TI - Molecular cloning and expression of mouse GD1alpha/GT1aalpha/GQ1balpha synthase (ST6GalNAc VI) gene JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.275.10.6717 DO - 10.1074/jbc.275.10.6717 ID - Okajima2000 ER - TY - JOUR AU - Tsuchida, A. AU - Okajima, T. AU - Furukawa, K. AU - Ando, T. AU - Ishida, H. AU - Yoshida, A. AU - Nakamura, Y. AU - Kannagi, R. AU - Kiso, M. AU - Furukawa, K. PY - 2003 DA - 2003// TI - Synthesis of disialyl Lewis a (Le(a)) structure in colon cancer cell lines by a sialyltransferase, ST6GalNAc VI, responsible for the synthesis of alpha-series gangliosides JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M211034200 DO - 10.1074/jbc.M211034200 ID - Tsuchida2003 ER - TY - STD TI - Dagan T, Sorek R, Sharon E, Ast G, Graur D: AluGene: a database of Alu elements incorporated within protein-coding genes. Nucleic Acids Res. 2004, D489-D492. 10.1093/nar/gkh132. 32 Database ID - ref37 ER - TY - CHAP AU - Levy, A. AU - Sela, N. AU - Ast, G. PY - 2007 DA - 2007// TI - TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates BT - Nucleic Acid Res ID - Levy2007 ER -