Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes

BMC Genomic Data

Table 1 Coverage of segmental duplication regions by 500 K EA and Nsp CN arrays.

	500 K EA	Nsp CN array
		Before probe filtering	After probe filtering	After local-correction filtering	After probe filtering	After local-correction filtering	After probe filtering	After local-correction filtering
			Data set 1		Data set 2		Data set 3
At least one marker	25.7%	90.3%	74.1%	73.5%	74.3%	73.8%	74.0%	73.0%
At least two markers	13.4%	85.2%	61.7%	60.5%	61.8%	60.7%	61.6%	60.3%
At least three markers	7.7%	78.1%	50.4%	49.2%	50.7%	49.5%	50.2%	49.1%
At least four markers	5%	69.7%	40.7%	39.1%	41.0%	39.3%	40.7%	39.3%

Note: Each data set represents a replicate of 1X–5X samples. For 500 K EA, marker refers to SNPs; For Nsp CN array, markers refer to Nsp fragments.
Segmental duplication data source [80]

ISSN: 2730-6844