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Table 2 Test results for observed data

From: Combining identity by descent and association in genetic case-control studies

Data SNP p genotype p FP p allele F case F control
AMD rs380390 0.0380 0.0090 0.0056 0.215 -0.073
  rs10272438 1.0000 0.9068 0.0194 0.733 0.611
AMD HK rs10490924 0.0002 0.0002 0.0002 0.243 -0.062
  rs10504152 0.0058 0.1286 0.2222 0.132 -0.271
  rs584244 0.1824 0.0996 0.1010 -0.011 -0.149
PD rs9952724 0.0004 0.0002 1.0000 0.788 0.022
  rs850084 0.0022 0.0002 0.9932 0.828 0.243
  rs10963676 0.0058 0.0004 0.0072 0.817 0.086
  rs4746675 0.0062 0.0004 1.0000 0.839 0.048
  rs557074 0.0068 0.0012 1.0000 0.736 0.029
  rs1504212 0.0088 0.0014 1.0000 0.494 -0.023
  rs12364577 0.0174 0.0020 1.0000 0.519 0.014
  rs1468375 0.0240 0.0042 0.0002 0.452 -0.040
  1. Results of the genotype, FP, and allele tests applied to three published datasets: AMD in Caucasians [11], AMD HK in data from Hong Kong [15], and PD [16]. Estimated F values based on observed numbers of genotypes in case and control individuals are unrestricted, that is, may be negative.