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Table 1 SNPs in the r2 ≥ 0.8 bin for rs16969968, sorted by genomic position, and their allele frequencies.

From: In search of causal variants: refining disease association signals using cross-population contrasts

SNP pos_bp gene SNP function Minor allele
frequency,
HapMap CEU
Minor allele
frequency,
HapMap YRI
Minor allele,
EA sample/
AA sample1
Minor allele
frequency,
EA sample
Minor allele
frequency,
AA sample
rs17483548 76517368 IREB2 LOCUS 0.408 0.00    
rs17405217 76518204 IREB2 INTRON 0.408 0.00    
rs17483721 76520786 IREB2 INTRON 0.408 0.175    
rs2656052 76527987 IREB2 INTRON 0.408 0.475 C/C 0.3313 0.4580
rs7181486 76528673 IREB2 INTRON 0.408 0.175    
rs17483929 76529431 IREB2 INTRON 0.408 0.175    
rs17484235 76548469 IREB2 INTRON 0.408 0.00    
rs9788721 76589924 LOC123688 INTRON 0.433 0.371 C/C 0.3452 0.3602
rs8034191 76593078 LOC123688 INTRON 0.433 0.142 C/C 0.3333 0.1595
rs10519203 76601101 LOC123688 INTRON 0.433 0.300 C/C 0.3353 0.3225
rs8031948 76603112 LOC123688 INTRON 0.432 0.103    
rs931794 76613235    0.433 0.292    
rs2036527 76638670    0.425 0.217 A/A 0.3323 0.2187
rs17486278 76654537 CHRNA5 INTRON 0.409 Not available G/G 0.3294 0.2942
rs7180002 76661048 CHRNA5 INTRON 0.417 0.117    
rs951266 76665596 CHRNA5 INTRON 0.417 0.117 A/A 0.3274 0.0858
rs16969968 76669980 CHRNA5 NONSYNON 0.424 0.00 A/A 0.3274 0.0497
rs1051730 76681394 CHRNA3 SYNON 0.4 0.110 T/T 0.3270 0.0943
rs1317286 76683184 CHRNA3 INTRON 0.405 0.297 G/G 0.3323 0.2204
rs12914385 76685778 CHRNA3 INTRON 0.43 0.198    
rs17487223 76711042 CHRNB4 INTRON 0.433 0.067    
  1. 1Minor allele in EA sample is the same as the minor allele in the AA sample for all genotyped SNPs