Detecting the effects of selection at the population level in six bovine immune genes

BMC Genomic Data

Table 1 Neutrality statistics for six genes re-sequenced in European and African B.taurus and B.indicus cattle

Gene name	N	S	No.Haplotypes	Hd	θ (persite)	π (persite)	Tajima's D	Fu & Li's D	Fu & Li's F	Fay & Wu's H	Fu's FS
ART4
Africa	20	6	6	0.747	0.0008	0.0010	0.721	-0.239	0.048	0.779	-0.168
Europe	36	6	6	0.783	0.0007	0.0006	-0.146	1.234	0.953	0.397	-0.481
Bos indicus	22	33	16	0.961	0.0042	0.0046	0.332	1.747**	1.549*	-2.338	-3.026
CD2
Africa	20	13	5	0.616	0.0010	0.0010	0.051	1.193	1.008	-1.2	2.696
Europe	36	30	10	0.846	0.0019	0.0016	-0.576	0.611	0.221	-9.511*	1.765
Bos indicus	22	29	10	0.87	0.0021	0.0023	0.236	1.2	1.068	-7.775	1.297
TYROBP
Africa	20	8	6	0.779	0.0006	0.0006	-0.137	0.799	0.62	-3.779*	-0.05
Europe	36	20	12	0.657	0.0012	0.0006	-1.607*	-1.193	-1.614	-7.356**	-3.455*
Bos indicus	22	12	11	0.913	0.0008	0.0010	0.745	0.629	0.799	1.887	-2.192
IL2
Africa	20	1	2	0.268	0.0001	0.0001	-0.086	0.627	0.512	-1.253	0.381
Europe	36	12	9	0.614	0.0008	0.0004	-1.754*	-1.144	-1.613	-5.680*	-3.667*
Bos indicus	22	7	7	0.593	0.0006	0.0004	-0.769	-1.479	-1.507	0.156	-2.008
IL13
Africa	20	15	9	0.653	0.0013	0.0005	-2.156***	-3.521***	-3.731***	1.621*	-3.877**
Europe	36	14	13	0.814	0.0011	0.0008	-0.998	-2.034*	-2.02	1.756	-4.530*
Bos indicus	22	14	12	0.935	0.0012	0.0014	0.741	1.232	1.296	2.13	-2.505
IL5
Africa	20	5	6	0.737	0.0008	0.0005	-1.298	1.133	0.495	12.547***	0.188
Europe	36	3	9	0.621	0.0009	0.0007	-0.729	0.823	0.350	-12.400**	-0.288
Bos indicus	22	4	10	0.753	0.0009	0.0008	-0.563	0.459	0.159	-3.151	-1.826

*/**/***indicate values that fall in a 0.05/0.01/0.001 negative tail under a standard coalescent simulation. Tajima's D and Fay and Wu's H values that fall in a 0.05 negative tail under a domestication simulation are indicated in bold type.

ISSN: 2730-6844