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Table 3 Results of BLAST Query – SDM fungal microsatellites showing homology against the NCBI database

From: Simple sequence repeat markers useful for sorghum downy mildew (Peronosclerospora sorghi) and related species

SSR loci

Locus, Species, & Most related sequence (Genomic DNA/EST)

Query coverage (%)

Identity (%)

E-value*

DM21

DQ645744, Phytophthora ramorum (Sudden oak death agent – Fungi), transposon GypsyPr-2 reverse transcriptase gene – Genomic DNA

26

96

3e–20

DM28

AF312890, Phytophthora cinnamomi SSR sequence – Genomic DNA

45

90

4e–36

DM53

DQ645744.1 – Phytopthora ramorum transposon GypsyPr-2 reverse transcriptase gene

96

78

4e–70

 

AY830104, (GypsyPi-3a), AY830105 (GypsyPi-3b) Phytophthora infestans – retrotransposon

93

96

3e–14

 

AF490339, Phytophthora infestans – Gypsy like retrotransposon,

87

90

2e–09

 

DQ645742, Phytophthora sojae transposon GypsyPs-1A reverse transcriptase gene

78

90

4e–07

DM55

AY564217, Phytophthora ipomoeae

54

90

6e–32

 

EU427470.1 – P. ramorum

52

89

3e–30

 

AY564219 – P. andina, AY564218-P. phaseoli, AY564213 to AY564216 – P. mirabilis, AY564209 to AY003911 – P. infestans &DQ832717 and AY564221- Phytophthora sojae

54

89

3e–30

 

- mitochondrion DNA

   
 

ES287433 and ES286374Phytophthora brassicae

54 54

88 88

2e–30 2e–29

 

CV935202Phytophthora infestans (potato late blight)

54

86

1e–26

 

EL774547, EL777768, EL775494, EL779446, EL781147 and EL775427Pythium ultimum

   
 

- ESTs,

   
  1. *E value or the Expect value is a parameter that describes the number of hits one can "expect" to see just by chance when searching a database of a particular size