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Table 1 Percent repetitive element content of reduced representation libraries.

From: SNP discovery in swine by reduced representation and high throughput pyrosequencing

Library1 Restriction Enzyme Site SINEs2 LINEs LTR DNA Total Centromeric Repeats3
GSS Sheared random 11.30 16.14 2.80 1.51 31.75 0.00
pRRL1 Alu I AG|CT 10.21 15.63 2.46 3.16 31.46 0.00
pRRL2 Hae III GG|CC 13.19 11.33 3.11 1.79 29.42 0.00
pRRL3 Bst U I CG|CG 1.98 0.40 0.03 0.42 2.83 23.83
pRRL4 Dra I TTT|AAA 32.04 4.85 1.67 1.09 39.65 0.00
pRRL5 Pvu II CAG|CTG 20.99 4.91 1.71 1.25 28.86 6.18
  1. 1 GSS refers to genome survey sequence and values were obtained from Wernersson et al., 2005 [14].
  2. 2 Values are given as percent of total. SINEs refers to short interspersed elements porcine SINE elements and MIRs; LINEs refers to LINE1, LINE 2, L3/CR1 and RTE elements; LTR refers to long terminal repeats MaLRs, and ERVL; DNA refers to MER1 and MER2-type elements. Total refers to percent of repetitive content identified by RepeatMasker.
  3. 3Values in the centromeric repeat column represent percent of sequences that contain a centromeric repeat and not percent of sequence content.