Skip to main content

Table 2 Average minor allele frequencies by breed for 168 sampled SNPs.

From: SNP discovery in swine by reduced representation and high throughput pyrosequencing

Breed

Number of Animals1

Number in Pool2

Genotyped (%)3

Monomorphic (%)4

Average MAF

Heterozygosity

Berkshire

7

3

98.21

20.83

0.2142

0.2866

Duroc

40

4

98.13

15.48

0.2003

0.2537

Eur. Wild Boar

5

0

99.28

44.64

0.1533

0.2520

Hampshire

29

4

98.81

12.50

0.2131

0.2692

Landrace

43

4

98.01

3.57

0.2457

0.3017

Meishan

5

0

98.10

44.64

0.1447

0.1881

Pietrain

6

2

98.81

25.00

0.2041

0.2892

Yorkshire

41

4

98.88

5.36

0.2429

0.2887

  1. 1Number of animals of each breed genotyped.
  2. 2Number of animals of each breed in the discovery library.
  3. 3Percent of animals that produced a genotype call.
  4. 4Percent of markers that were monomorphic for that breed.