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Table 2 Average minor allele frequencies by breed for 168 sampled SNPs.

From: SNP discovery in swine by reduced representation and high throughput pyrosequencing

Breed Number of Animals1 Number in Pool2 Genotyped (%)3 Monomorphic (%)4 Average MAF Heterozygosity
Berkshire 7 3 98.21 20.83 0.2142 0.2866
Duroc 40 4 98.13 15.48 0.2003 0.2537
Eur. Wild Boar 5 0 99.28 44.64 0.1533 0.2520
Hampshire 29 4 98.81 12.50 0.2131 0.2692
Landrace 43 4 98.01 3.57 0.2457 0.3017
Meishan 5 0 98.10 44.64 0.1447 0.1881
Pietrain 6 2 98.81 25.00 0.2041 0.2892
Yorkshire 41 4 98.88 5.36 0.2429 0.2887
  1. 1Number of animals of each breed genotyped.
  2. 2Number of animals of each breed in the discovery library.
  3. 3Percent of animals that produced a genotype call.
  4. 4Percent of markers that were monomorphic for that breed.