Table 1 Summary of the accuracies of IMPUTE using data from chromosome 21 in the NNC set
From: Imputation of missing genotypes: an empirical evaluation of IMPUTE
Accuracy | ||||||
|---|---|---|---|---|---|---|
| Â | Missing | 0.1% | 1% | 10% | 40% | 60% |
Complete missing | Overall | 97.42% (0.20, 0.93, 0.99, 1) | 97.42% (0.01, 0.93, 0.99, 1) | 97.05% (0.01, 0.92, 0.99, 1) | 95.20% (0.01, 0.88, 0.99, 1) | 91.88% (0.01, 0.82, 0.97, 1) |
| Â | 0.95 P.P. | 99.24% (0.00, 0.98, 1.00, 1) | 99.24% (0.00, 0.98, 1.00, 1) | 99.22% (0.00, 0.98, 1.00, 1) | 99.06% (0.00, 0.98, 1.00, 1) | 98.86% (0.00, 0.97, 1.00, 1) |
| Â | Percentage | 82.30% | 82.31% | 80.38% | 71.16% | 59.39% |
80% missing | Overall | 97.24% (0.28, 0.93, 0.99, 1) | 97.70% (0.01, 0.93, 0.99, 1) | 97.24% (0.01, 0.93, 0.99, 1) | 95.39% (0.01, 0.88, 0.99, 1) | 91.71% (0.00, 0.82, 0.97, 1) |
| Â | 0.95 P.P. | 99.38% (0.00, 0.98, 1.00, 1) | 99.42% (0.00, 0.98, 1.00, 1) | 99.27% (0.00, 0.98, 1.00, 1) | 99.04% (0.00, 0.98, 1.00, 1) | 98.95% (0.00, 0.97, 1.00, 1) |
| Â | Percentage | 81.92% | 82.08% | 80.53% | 71.39% | 59.12% |