Table 2 The SNPs in the 639 nt promoter region of bovine NPY gene those affects the putative transcription factors
Putative transcription factors | Start | End | Recognition sequence | SNPs |
|---|---|---|---|---|
PAX-4/PAX-6 paired domain binding sites | -356 | -338 | gagataggt GCAGcccaga* | A/T (-347) |
GATA binding factors | -348 | -336 | cagaGATAggt gc* | A/T (-347) |
Nuclear factor 1 | -341 | -321 | ccg gtctagtcctGCCAgaga* | C/A (-324) |
Vertebrate SMAD family of transcription factors | -331 | -323 | g GTCTagtc* | C/A (-324) |
E-box binding factors | -324 | -312 | cctCCACgcccg g* | C/A (-324) |
Nuclear receptor subfamily 2 factors | -280 | -256 | t ggaccacgcCAAAgcacaagtttc* | A/C (-257) |
EGR/nerve growth factor induced protein C & related factors | -135 | -119 | aaggg AG GGggtccaga* | +C (-122), +C(-124) |
EGR/nerve growth factor induced protein C & related factors | -133 | -117 | ataaGGG Ag ggggtcca* | +C (-122), +C(-124) |
Pleomorphic adenoma gene | -132 | -112 | GGGGgataaggg ag ggggtcc* | +C (-122), +C(-124) |
Myc associated zinc fingers | -131 | -119 | aaggg aG GGGgtc* | +C (-122), +C(-124) |
GC-Box factors SP1/GC | -131 | -117 | ataagGG AG ggggtc* | +C (-122), +C(-124) |
Gut-enriched Krueppel like binding factor | -128 | -116 | gataaggg aG GGG* | +C (-122), +C(-124) |
GATA binding factors | -124 | -112 | ggggGATAaggg a* | +C (-124) |
Autoimmune regulatory element binding factor | -38 | -12 | ttgcaaca gggtttttaTG GCtctccc* | +C (-31), T/G(-20) |
Tata-binding protein factor | -33 | -17 | agcc aTAAAaaccct gt | +C (-31), T/G(-20) |