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Table 3 Single nucleotide polymorphisms (SNPs) in the exonic (in bold letters), intronic and 3' regions of bovine neuropeptide Y (NPY) gene.

From: Mapping of the transcription start site (TSS) and identification of SNPs in the bovine neuropeptide Y (NPY) gene

NCBI dbSNP Accession ss#

Locus

SNP

Bos taurus (n = 34)

B. indicus (n = 6)

   

Major allele frequency

Heterozygous

Major allele frequency

Heterozygous

107795833

197

C/G

-

-

0.83

0

107795834

218

G/C

0.91

0

0.83

0

107795835

228

C/T

0.99

1

0.67

4

107795836

305

C/G

0.93

3

0.92

1

107795837

358

G/A

0.99

1

0.75

3

107795838

361

A/C

0.93

3

0.92

1

107795839

380

G/A

-

-

0.67

4

107795840

592

C/A

0.99

1

0.67

2

107795841

642

G/A

0.93

3

0.88

1

107795842

762

T/C

0.96

1

0.92

1

107795843

820

G/A

0.97

0

-

-

107795844

1004

C/+

-

-

0.83

0

107795845

1014

C/T

0.97

2

0.83

0

107795846

1100

C/T

0.99

1

-

-

107795847

1106

C/G

-

-

0.90

1

107795848

1312

A/C

0.75

9

-

-

107795849

1321

A/G

0.87

5

-

-

107795850

1420

C/A

-

-

0.90

1

107795851

1541

G/A

-

-

0.80

2

107795852

1694

A/G

0.57

11

-

-

107795853

1713

G/T

0.85

4

-

-

107795854

1757

G/A

-

-

0.80

2

107795855

1865

T/C

0.93

3

-

-

107795856

2175

C/T

0.91

4

-

 

107795857

2551

A/-

-

-

-

-

107795858

2892

G/A

0.70

14

-

-

107795859

3883

A/-

-

-

-

-

107795860

4018

G/A

0.97

0

-

-

107795861

4042

G/A

-

-

0.80

2

107795862

4066

T/C

0.75

9

-

-

107795863

4953

G/A

0.96

3

-

-

107795864

5213

C/G

0.96

3

-

-

107795865

5273

A/G

0.96

3

-

-

107795866

5280

T/A

0.96

3

-

-

107795867

5642

C/T

0.95

3

0.75

1

107795868

5930

A/G

-

-

0.83

2

107795869

6341

G/A

-

-

0.50

4

107795870

6368

T/G

0.95

3

0.75

1

107795871

6385

A/G

0.95

3

0.75

1

107795872

6400

C/T

0.95

3

0.75

1

107795873

6526

A/T

0.98

1

-

-

107795874

6527

G/A

0.95

3

-

-

107795875

6658

A/C

0.91

4

0.83

2

107795876

6751

T/G

0.99

1

-

 

107795877

6887

A/T

-

-

0.83

2

107795878

7192

C/T

0.50

16

-

-

107795879

7211

A/T

0.91

4

-

-

107795880

7552

T/-

0.88

0

0.80

0

107795881

7553

C/-

0.88

0

0.80

0

107795882

7641

T/G

0.88

2

-

-