Figure 2
From: Impact of pre-imputation SNP-filtering on genotype imputation results
Pairwise comparison of the analyzed measures of imputation quality. Distribution and pair-wise correlation of SEN-scores obtained from MaCH ( MaCH_SEN) and IMPUTE (IMPUTE2_SEN), Hellinger score obtained from MaCH (MaCH_HELLI) and from IMPUTE (IMPUTE2_HELLI), MaCH Rsq-score(MaCH_Rsq) and IMPUTE-info (IMPUTE2_INFO) score are shown. We present the results for the scenario “Entire SNP imputation” without pre-filtering (“ALL”) with 50% missing SNPs. Values refer to the squared Pearson correlation.