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Table 1 Characteristics of GWGGI

From: GWGGI: software for genome-wide gene-gene interaction analysis

  T1D CAD
LRMW TAMW LRMW TAMW
# of SNPs 2184 2184 459 K 459 K
# of samples 4901 4901 4864 4864
Memory usage 7 Mb 7 Mb 731 M 738 M
Loading time <1’s <1’s 3 min 3 min
Analysis time 1.5 min 3 min 3.5 hr 10 hr
Selected SNPs 7 SNPs 472 SNPs 6 SNPs 57 SNPs
AUC 0.844 0.776 0.672 0.719
P-value* 1.12e-268 3.06e-138 1.78e-33 4.11e-65
  1. *P-values were calculated by applying the model built from the training dataset to the testing dataset.