From: Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy
 | Chromosome 1 | Chromosome 29 | ||||||
---|---|---|---|---|---|---|---|---|
 | SNP (1,069,830) | Indels (76,351) | SNP (405,507) | Indels (26,210) | ||||
Scenario | n | r | n | r | n | r | n | r |
HOL20 | 630,092 | 0.71 | 42,324 | 0.56 | 238,473 | 0.60 | 14,323 | 0.47 |
MIX80 | 646,872 | 0.84 | 44,023 | 0.71 | 252,571 | 0.75 | 15,370 | 0.64 |
HOL80 | 646,796 | 0.88 | 44,027 | 0.76 | 252,439 | 0.81 | 15,374 | 0.70 |
MIX140 | 647,200 | 0.89 | 44,051 | 0.78 | 252,996 | 0.83 | 15,403 | 0.73 |