From: Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy
MAF range | n alleles1 | n variants | HOL80 | MIX80 | ||
---|---|---|---|---|---|---|
 |  |  | MAF | r | MAF | r |
> 0.1 | > 16 | 15,736 | 0.16529 | 0.87 | 0.04369 | 0.78 |
0.05625-0.1 | 9-16 | 23,057 | 0.07367 | 0.79 | 0.02289 | 0.63 |
0.03125-0.05 | 5-8 | 14,825 | 0.04061 | 0.63 | 0.01046 | 0.30 |
0.01875-0.025 | 3-4 | 9,185 | 0.02152 | 0.54 | 0.00855 | 0.24 |
0.0125 | 2 | 2,616 | 0.01250 | 0.38 | 0.00679 | 0.13 |
0.00625 | 1 | 1,663 | 0.00625 | 0.18 | 0.00625 | 0.14 |