Table 2 Observed statistical power of QTL additive and epistatic effect detection and effect estimation from simulation with architecture 2
QTL | Chr:cM | Eff | Pw11 | Pw12 | Pw21 | Pw22 | Pw31 | Pw32 | EffE | PosE | Cov | Width | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 1:47 | 1.42 | 99.3 | 88.5 | 88.5 | 88.5 | 88.5 | 100.0 | 1.27 | (.16) | 47.1 | (1.1) | 99.3 | 8.9 |
2 | 1:80 | 0.76 | 89.7 | 89.1 | 96.0 | 96.0 | 96.0 | 84.5 | 0.69 | (.30) | 81.7 | (1.1) | 100.0 | 15.3 |
3 | 2:49 | -0.04 | 7.1 | 0.0 | 0.0 | 0.0 | 48.1 | 48.1 | -0.11 | (.12) | 54.6 | (1.8) | 97.8 | 21.6 |
4 | 3:22 | -0.46 | 64.9 | 53.1 | 54.1 | 54.1 | 61.9 | 61.9 | -0.37 | (.29) | 23.9 | (0.7) | 100.0 | 8.4 |
5 | 3:78 | 0.04 | 6.1 | 0.0 | 54.0 | 54.0 | 61.8 | 61.8 | 0.01 | (.04) | 78.2 | (0.6) | 100.0 | 11.6 |
6 | 6:5 | -0.06 | 8.2 | 0.0 | 0.0 | 0.0 | 47.8 | 47.8 | -0.08 | (.08) | 2.4 | (0.9) | 100.0 | 15.8 |
7 | 7:70 | 0.83 | 100 | 100 | 99.9 | 99.9 | 99.9 | 99.9 | 0.68 | (.04) | 69.2 | (0.7) | 99.0 | 13.3 |
8 | 9:63 | 0.13 | 11.1 | 0.0 | 54.0 | 54.0 | 54.0 | 54.0 | 0.01 | (.03) | 61.5 | (2.9) | 99.5 | 16.5 |
FPR | .08 | 0.0 | 0.0 | 0.0 | .004 | .004 | ||||||||
#QTL | (std | 2.36) | 4.20 | 3.38 | 4.47 | 4.47 | 5.60 | 5.60 | ||||||
EPIS | Q1:Q2 | Eff | Pw11 | Pw12 | Pw21 | Pw22 | Pw31 | Pw32 | EffE | |||||
1 | 1:2 | 0.49 | 15.9 | 0 | 0 | 0 | 0 | 0 | - | - | ||||
2 | 2:4 | 0.99 | 20.9 | 0 | 0 | 0 | 0.7 | 0 | - | - | ||||
3 | 2:7 | -0.82 | 45.8 | 23.6 | 23.7 | 12.9 | 12.9 | 8.6 | -0.08 | (.28) | ||||
4 | 3:6 | -1.63 | 0 | 0 | 0 | 0 | 47.8 | 47.8 | -0.59 | (.62) | ||||
5 | 4:5 | -1.31 | 0 | 0 | 53.9 | 53.9 | 61.7 | 61.8 | -1.17 | (.92) | ||||
6 | 4:8 | 1.14 | 0.7 | 0 | 53.9 | 53.9 | 53.9 | 54.0 | 0.79 | (.73) | ||||
7 | 5:7 | 0.98 | 0.5 | 0 | 48 | 20.8 | 23.5 | 23.5 | 0.23 | (.41) | ||||
8 | 7:8 | -0.98 | 1.7 | 0 | 53.9 | 53.5 | 53.5 | 53.5 | -0.52 | (.49) | ||||
FPR | .313 | .123 | .125 | .013 | .079 | .030 | ||||||||