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Figure 1 | BMC Genetics

Figure 1

From: Hypothesis testing of meiotic recombination rates from population genetic data

Figure 1

Interleaved HMM. The interleaved HMM with coupled hidden chains used in the OVERPAINT model to compute [adapted from Figure two(b) of [4]]. h k+1,j is the allele state at the j th site of haplotype h k+1. X j and G j denote the j th hidden state of the crossover and gene conversion chain, respectively, and their joint configuration determines the index of the haplotype from which h k+1,j is copied.

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