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Table 2 Genotypes, allele frequencies and the significance of deviations from HWE 1

From: Associations between variants of the HALgene and milk production traits in Chinese Holstein cows

Submission number Location of SNP Position on Btau_4.6.1 Allele substitution Genotype Genotype frequencies MAF 2 P -value 3
974768522 Promoter 64547553 C > T CC 0.426 0.339 0.253
     CT 0.468   
     TT 0.106   
974768523 Exon1 64547394 T > C TT 0.527 0.281 0.257
     TC 0.385   
     CC 0.086   
974768524 Intron2 64546261 T > C TT 0.588 0.251 0.0004
     TC 0.323   
     CC 0.089   
974768525 Exon5 64545391 C > T CC 0.647 0.196 0.898
     CT 0.314   
     TT 0.039   
974768527 Exon8 64543949 G > A GG 0.523 0.282 0.307
     GA 0.389   
     AA 0.088   
974768529 Intron11 64537682 A > G AA 0.078 0.267 0.370
     AG 0.378   
     GG 0.544   
974768531 Intron17 64529509 T > C TT 0.433 0.327 0.018
     TC 0.481   
     CC 0.086   
974768533 3′UTR 64525640 C > A CC 0.091 0.307 0.680
     CA 0.433   
     AA 0.476   
974768534 3′UTR 64524579 C > T CC 0.486 0.304 0.850
     CT 0.420   
     TT 0.094   
  1. 1HWE = Hardy-Weinberg equilibrium.
  2. 2MAF = Minor allele frequency.
  3. 3P-value was computed for each SNP by chi-square test.