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Table 3 Haplotypes, their frequencies and associations with milk production traits in Chinese Holstein cows

From: Associations between variants of the HALgene and milk production traits in Chinese Holstein cows

Haplotypes SNP1 C > T SNP2 T > C SNP3 T > C SNP4 C > T SNP5 G > A SNP6 A > G SNP7 A > C SNP8 C > T Frequency (%) MY PY
P-value APV P-value APV
TTTCGG T T T C G G    33.9 2.38E-03 2.85E-03* 3.31E-03 6.26E-03*
CCCCAG C C C C A G    24.8     
CTTTGA C T T T G A    16.6     
CTTCGA C T T C G A    9.4     
CTTCGG C T T C G G    9.1     
Pooled haplotypes C T T T G G    3.0     
C C T C A G    2.4     
C C T C A A    0.07     
C T T C A G    0.01     
AC        A C 38.8 6.75E-04 1.87E-03* 7.78E-03 9.03E-03*
CC        C C 30.8     
AT        A T 30.4     
  1. SNP1 to SNP8 represent SNPs with the submission numbers of 974768522, 974768523, 974768524, 974768525, 974768527, 974768529, 974768533 and 974768534 respectively. APV = Adjusted P-value, *APV indicates the significant associations after false discovery rate correction for multiple testing.