Skip to main content

Table 3 Haplotypes, their frequencies and associations with milk production traits in Chinese Holstein cows

From: Associations between variants of the HALgene and milk production traits in Chinese Holstein cows

Haplotypes

SNP1 C > T

SNP2 T > C

SNP3 T > C

SNP4 C > T

SNP5 G > A

SNP6 A > G

SNP7 A > C

SNP8 C > T

Frequency (%)

MY

PY

P-value

APV

P-value

APV

TTTCGG

T

T

T

C

G

G

  

33.9

2.38E-03

2.85E-03*

3.31E-03

6.26E-03*

CCCCAG

C

C

C

C

A

G

  

24.8

    

CTTTGA

C

T

T

T

G

A

  

16.6

    

CTTCGA

C

T

T

C

G

A

  

9.4

    

CTTCGG

C

T

T

C

G

G

  

9.1

    

Pooled haplotypes

C

T

T

T

G

G

  

3.0

    

C

C

T

C

A

G

  

2.4

    

C

C

T

C

A

A

  

0.07

    

C

T

T

C

A

G

  

0.01

    

AC

      

A

C

38.8

6.75E-04

1.87E-03*

7.78E-03

9.03E-03*

CC

      

C

C

30.8

    

AT

      

A

T

30.4

    
  1. SNP1 to SNP8 represent SNPs with the submission numbers of 974768522, 974768523, 974768524, 974768525, 974768527, 974768529, 974768533 and 974768534 respectively. APV = Adjusted P-value, *APV indicates the significant associations after false discovery rate correction for multiple testing.
Back to article page

BMC Genomic Data

ISSN: 2730-6844

Contact us