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Table 1 Distributions of the 29 genotyped SNPs in the ISOR study

From: Combined effect of established BMI loci on obesity-related traits in an Algerian population sample

   ISOR study Speliotes et al. study
Nearby gene or locus SNP EA OA Genotype p HWE EAF/OAF EAF/OAF
     0 1 2    
FTO rs9939609 A T 278(0.37) 370(0.49) 106(0.14) 0.33 0.39/0.61 0.42/0.58
TMEM18 rs2867125 C T 21(0.03) 212(0.28) 520(0.69) 0.96 0.83/0.17 0.83/0.17
MC4R rs571312 A C 454(0.60) 267(0.36) 31(0.04) 0.29 0.22/0.78 0.24/0.76
GNPDA2 rs10938397 G A 256(0.35) 380(0.51) 107(0.14) 0.08 0.40/0.60 0.43/0.57
BDNF rs10767664 A T 31(0.04) 219(0.29) 496(0.67) 0.29 0.81/0.19 0.78/0.22
NEGR1 rs2815752 A G 69(0.09) 299(0.41) 372(0.50) 0.43 0.70/0.30 0.61/0.39
SH2B1 rs7359397 T C 547(0.73) 186(0.25) 17(0.02) 0.82 0.15/0.85 0.40/0.60
ETV5 rs9816226 T A 40(0.05) 252(0.34) 448(0.61) 0.59 0.78/0.22 0.82/0.18
MTCH2 rs3817334 T C 260(0.35) 335(0.44) 160(0.21) 7.5×10-3 0.43/0.57 0.41/0.59
KCTD15 rs29941 G A 59(0.08) 284(0.37) 417(0.55) 0.25 0.74/0.26 0.67/0.33
SEC16B rs543874 G A 522(0.69) 220(0.29) 18(0.02) 0.41 0.17/0.83 0.19/0.81
TFAP2B rs987237 G A 552(0.73) 176(0.23) 28(0.04) 4.0×10-3 0.15/0.85 0.18/0.82
FAIM2 rs7138803 A G 359(0.48) 319(0.42) 73(0.10) 0.87 0.31/0.69 0.38/0.62
NRXN3 rs10150332 C T 455(0.61) 256(0.34) 38(0.05) 0.76 0.22/0.78 0.21/0.79
RBJ rs713586 C T 203(0.27) 375(0.51) 163(0.22) 0.74 0.47/0.53 0.47/0.53
GPRC5B rs12444979 C T 8(0.01) 144(0.19) 607(0.80) 0.89 0.89/0.11 0.87/0.13
MAP2K5 rs2241423 G A 58(0.08) 274(0.36) 419(0.56) 0.19 0.74/0.26 0.78/0.22
QPCTL rs2287019 C T 34(0.05) 223(0.30) 484(0.65) 0.19 0.80/0.20 0.80/0.20
TNNI3K rs1514175 A G 229(0.30) 358(0.47) 170(0.23) 0.19 0.46/0.54 0.43/0.57
SLC39A8 rs13107325 T C 730(0.96) 33(0.04) - 0.54 0.02/0.98 0.07/0.93
FLJ35779 rs2112347 T G 78(0.11) 298(0.40) 364(0.49) 0.15 0.69/0.31 0.63/0.37
LRRN6C rs10968576 G A 590(0.78) 147(0.19) 19(0.03) 7.3×10-3 0.12/0.88 0.31/0.69
TMEM160 rs3810291 A G 209(0.28) 356(0.47) 190(0.25) 0.16 0.49/0.51 0.67/0.33
PRKD1 rs11847697 T C 569(0.76) 166(0.22) 17(0.02) 0.21 0.13/0.87 0.04/0.96
LRP1B rs2890652 C T 526(0.69) 212(0.28) 19(0.03) 0.68 0.17/0.83 0.18/0.82
PTBP2 rs1555543 C A 238(0.32) 378(0.51) 129(0.17) 0.32 0.43/0.57 0.59/0.41
MTIF3 rs4771122 G A 500(0.66) 225(0.30) 27(0.04) 0.74 0.19/0.81 0.24/0.76
RPL27A rs4929949 C T 277(0.37) 325(0.44) 142(0.19) 8.4×10-3 0.41/0.59 0.52/0.48
NUDT3 rs206936 G A 344(0.46) 323(0.43) 79(0.11) 0.73 0.32/0.68 0.21/0.79
  1. EA: effect allele. OA: other allele. EAF: effect allele frequency. OAF: other allele frequency.
  2. Genotypes were coded as 0/1/2, indicating the subject’s number of copies of the designated effect alleles.
  3. p HWE: p values for Hardy-Weinberg Equilibrium test.