Integrative Bayesian variable selection with gene-based informative priors for genome-wide association studies

BMC Genomic Data

Table 2 Information of 24 common SNPs selected by both iBVS and Lasso

SNP	Chromosome	Position	Gene	Posterior probability	Lasso coefficient	Stepwise coefficient
rs9270984	6	32681969	HLA-DR–DQ	0.583	0.307	0.195
rs7595482	2	38106517	FAM82A1	0.329	−0.031	-
rs10133203	14	51425137	GNG2	0.311	−0.314	-
rs2517467	6	30997239	VARS2	0.283	0.237	0.148
rs3764147	13	43355925	C13orf31	0.272	0.227	0.114
rs1446297	2	38061737	FAM82A1	0.256	−0.208	-
rs2237585	7	94887754	PON2	0.187	−0.222	-
rs42490	8	90847650	RIPK2	0.135	−0.143	-
rs602875	6	32681607	HLA-DR–DQ	0.104	−0.090	-
rs16945848	15	60913837	TLN2	0.093	0.245	-
rs241409	6	32969898	LOC100294145	0.082	0.018	-
rs12817755	12	38585079	SLC2A13	0.08	−0.137	-
rs1343104	20	57607136	PHACTR3	0.075	−0.06	-
rs10502281	11	123261833	TMEM225	0.071	−0.105	-
rs2305100	13	43346934	CCDC122	0.066	0.001	-
rs447833	20	42696770	ADA	0.058	0.209	-
rs11632705	15	25141046	GABRG3	0.057	−0.043	-
rs17065164	13	43342706	CCDC122	0.051	−0.066	-
rs11900859	2	138039737	THSD7B	0.051	0.071	-
rs241443	6	32905093	TAP2	0.045	0.18	-
rs1897419	2	137473187	THSD7B	0.045	0.023	-
rs1805867	8	91100250	DECR1	0.043	−0.126	-
rs2517598	6	30188253	TRIM31	0.043	0.248	-
rs17110817	14	80120188	CEP128	0.04	0.005	-

ISSN: 2730-6844