From: Genetic diversity analysis in a set of Caricaceae accessions using resistance gene analogues
Marker name | Gene | Protein | Ann temp | Exon no. | Expected size of amplification product in rice in bp | Forward primer | Reverse primer |
---|---|---|---|---|---|---|---|
BDTG 1 | Xa1 | P LOOP | 59.8 | 1 | 508 | 5′ -ATTAATCCACGACGACCAGG – 3′ | 5′ -GTAGCACAAGCACCTCCTCC – 3′ |
BDTG 2 | ” | KINASE 2 | 60 | 2 | 429 | 5′ -GAGGAGGTGCTTGTGCTACAG – 3′ | 5′ -GGCACTGGCATTACCTTGAT – 3′ |
BDTG 3 | ” | TRANS MEM | 59.5 | 3 | 519 | 5′ -GGTGAGGGTGCATCAAATG – 3′ | 5′ -TTATTCCTTCGTGGCTCTGG – 3′ |
BDTG 4 | ” | ” | 59.8 | 3 | 531 | 5′ -TTGGATCATGTCTCCAACCA – 3′ | 5′ -ACTTCAGCGCTTGCATGAT – 3′ |
BDTG 5 | ” | ” | 59.8 | 3 | 877 | 5′ -CATCTATCCAACCCCTTACAGC – 3′ | 5′-CAAGCTTGTTCATGGATTTCAA – 3′ |
BDTG 6 | ” | ” | 60.2 | 3 | 1778 | 5′ -TAGAACTCAGGAGGAGGCATGT – 3′ | 5′ -TGATTGCGGAAGGATACACA – 3′ |
BDTG 7 | ” | ” | 60.2 | 3 | 570 | 5′ -AGATGGAATGTGTATCCTTCCG – 3′ | 5′ -GGAAGGATACACCTTCCATTTTC – 3′ |
BDTG 8 | ” | LRR | 59.5 | 4 | 719 | 5′ -GATGGCTCCTACCGCTATCA – 3′ | 5′ -GATGTGCAAGAATGGAGCTG – 3′ |
BDTG 9 | ” | ” | 60.9 | 4 | 569 | 5′ -CTCAAATTTAGTGTCTCTGCAGCTC – 3′ | 5′ -TCCGCGATAGTTAAGCTCTAGG – 3′ |
BDTG 10 | ” | ” | 60 | 4 | 735 | 5′ -TCTGCAAGCACCTCACCTC –3′ | 5′ -ATGCATTGGAGCGGATTG – 3′ |
BDTG 11 | xa5 | TF II A | 59.9 | 1 | 258 | 5′ -TTCGAGCTCTACCGGAGGT – 3′ | 5′ -AGAAACCTTGCTCTTGACTTGG – 3′ |
BDTG 12 | ” | ” | 60.2 | 2 | 141 | 5′ -TGTTCTTTTCTCAGGGCCAC – 3′ | 5′ -AGTTTGGAATCACAGGCCAC – 3′ |
BDTG 13 | Xa26 | RECP KINASE | 59.5 | 1 | 594 | 5′ -GATGCATACTCTTGCTGCCA – 3′ | 5′ -CAAGACTGTGCAACCCCTG – 3′ |
BDTG 14 | ” | ” | 60.1 | 1 | 652 | 5′ -ACCAGCTATACGGTCCAATCC – 3′ | 5′ -GCAAGATGCAACCATGAAAGT – 3′ |
BDTG 15 | ” | ” | 59.6 | 1 | 616 | 5′ -CTATTCCTGCTTCTCTTGGCA – 3′ | 5′ -AGCCTGACGATTTTATCAAGATG – 3′ |
BDTG 16 | ” | ” | 59.6 | 1 | 636 | 5′ -CATCTTGATAAAATCGTCAGGCT – 3′ | 5′ -GGTTGCACGAAGAAGCTCAT – 3′ |
BDTG 17 | ” | ” | 59.8 | 1 | 524 | 5′ -CGATGATAGCATGTTGGGC – 3′ | 5′ -AAAAACTATTAAGTACCTGGTGCCAT– 3′ |
BDTG 18 | ” | ” | 59.9 | 1 | 567 | 5′ -TGAGCAGAGTATGGGACTCTAGG – 3′ | 5′ -ACACCAACTATAAATTGTTGCAGAAC – 3′ |
BDTG 19 | Xa27 | ” | 59.9 | 1 | 391 | 5′ -GAAGCCACACACACTGAGACA – 3′ | 5′ -CGGAGGAGAACTAGAGAGACCA –3′ |
BDTG 20 | Xa21 | SIGNAL | 59.7 | 1 | 200 | 5′ -CACTCCCATTATTGCTCTTCG – 3′ | 5′ -ACACAACACCCACCCATGT – 3′ |
BDTG 21 | ” | LRR | 61.8 | 2 | 500 | 5′ -GCTCCTCCAACCTGTCCG – 3′ | 5′ -TAAACGCTCTTAGAGACGAAAGGT – 3′ |
BDTG 22 | ” | ” | 59.7 | 2 | 591 | 5′ -CAATTCTATCTGGAACCTTTCGTC – 3′ | 5′-ACCGCTCAAGTTGTTTTCGT – 3′ |
BDTG 23 | ” | ” | 60 | 2 | 601 | 5′ -GGCATTCTACTCGCCTACGA – 3′ | 5′ -GCATTGCCTTGGATTGAGAT – 3′ |
BDTG 24 | ” | CHARGED | 59.8 | 3 | 707 | 5′-TGCCTCGATGTTGTCCATTA – 3′ | 5′ -TCAATGAGGTCCCATCAACA – 3′ |
BDTG 25 | ” | KINASE | 60.1 | 4 & 5 | 1268 | 5′ -AGGGACAATTGGCTATGCAG – 3′ | 5′ -AGAATTCAAGGCTCCCACCT – 3′ |
BDTG 26 | Xa21(A1) | LRR | 59.8 | 1 | 280 | 5′ -TGTTGTTCTCTGCGCTGC – 3′ | 5′ -CGTCCTGAGGAAGGATAGGTT –3′ |
BDTG 27 | ” | ” | 59.6 | 1 | 408 | 5′ -CATCGCTGGGCAACCTAT – 3′ | 5′ -TTGGACACGACTTCAAATATGG – 3′ |
BDTG 28 | ” | ” | 59.6 | 1 | 397 | 5′-CCCAGATCCTATTTGGAACATC – 3′ | 5′ -TGGAAACAGAATCAGGGAGG – 3′ |
BDTG 29 | ” | ” | 59.9 | 1 | 410 | 5′ -AGGTTGCAAATTTGGTGGAG – 3′ | 5′ -GGAATGCTAAATATTTCAATGGGA – 3′ |
BDTG 30 | ” | ” | 60.2 | 1 | 391 | 5′ -TAGGGCAAATTCCCATTGAA – 3′ | 5′ -AAAACACCATTGGTTGGCA – 3′ |
BDTG 31 | ” | ” | 59.9 | 1 | 405 | 5′ -CTTTCGTTCAACAGCTTCCAC – 3′ | 5′ -CACCATCTTGACTATCAAATTCTCC – 3′ |
BDTG 32 | ” | ” | 59.9 | 1 | 563 | 5′ -CTTTCGTTCAACAGCTTCCAC – 3′ | 5′ -CAATGAAAGGAGGTAGACATAAACAGT – 3′ |
BDTG 33 | ” | SNAP | 60.2 | 2 | 215 | 5′ -ACTGTTTATGTCTACCTCCTTTCATTG – 3′ | 5′ -AATAGATTTGCTACGGTCGAACA – 3′ |
BDTG 34 | ” | KINASE | 59.7 | 3 | 363 | 5′ -TTTGTTATGGAATTCTAGTGTTGGAA – 3′ | 5′ -CCAACATAACATCAGCATGTCTC – 3′ |