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Table 2 SNP number and location for 16 gene fragments sequenced in 48 diploid Citrus genotypes

From: Next generation haplotyping to decipher nuclear genomic interspecific admixture in Citrusspecies: analysis of chromosome 2

Gene fragment

Total Sequence

Intron

Exon

3′-UTR

Seq size

SNP

SNP/kb

Trialelic SNP

Seq size

SNP

SNP/kb

Seq size

SNP

SNP/kb

Seq size

SNP

SNP/kb

2P737170

452

22

48.67

Exon

0

0

-

452

22

48.67

0

0

-

2P3068140

421

14

33.25

_

337

12

35.61

84

2

23.81

0

0

-

2P4517048

502

12

23.90

_

0

0

-

316

4

12.66

186

8

43.01

2P8108334

502

40

79.68

Exon

0

0

-

502

40

79.68

0

0

-

2P11442721

547

21

38.39

Exon

0

0

-

547

21

38.39

0

0

-

2P13928427

502

21

41.83

_

0

0

-

336

15

44.64

166

6

36.14

2P21022460

538

11

20.45

_

0

0

-

538

11

20.45

0

0

-

2P25198627

454

12

26.43

_

128

7

54.69

326

5

15.34

0

0

-

2P26819388

535

22

41.12

Exon

0

0

-

535

22

41.12

0

0

-

2P29538734

541

36

66.54

Exon

190

12

63.16

351

24

68.38

0

0

-

2P30446231

475

28

58.95

_

216

15

69.44

259

13

50.19

0

0

-

2P32507721

463

16

34.56

_

0

0

-

463

16

34.56

0

0

-

2P33532337

459

9

19.61

_

0

0

-

459

9

19.61

0

0

-

2P33506778

536

6

11.19

Exon

0

0

-

536

6

11.19

0

0

-

2P35391362

449

19

42.32

_

108

6

55.56

341

13

38.12

0

0

-

2P36235952

519

29

55.88

Exon

141

8

56.74

378

21

55.56

0

0

-

16

7895

318

40.28

 

1120

60

53.57

6423

244

37.99

352

14

39.77