Skip to main content

Advertisement

Table 2 SNP number and location for 16 gene fragments sequenced in 48 diploid Citrus genotypes

From: Next generation haplotyping to decipher nuclear genomic interspecific admixture in Citrusspecies: analysis of chromosome 2

Gene fragment Total Sequence Intron Exon 3′-UTR
Seq size SNP SNP/kb Trialelic SNP Seq size SNP SNP/kb Seq size SNP SNP/kb Seq size SNP SNP/kb
2P737170 452 22 48.67 Exon 0 0 - 452 22 48.67 0 0 -
2P3068140 421 14 33.25 _ 337 12 35.61 84 2 23.81 0 0 -
2P4517048 502 12 23.90 _ 0 0 - 316 4 12.66 186 8 43.01
2P8108334 502 40 79.68 Exon 0 0 - 502 40 79.68 0 0 -
2P11442721 547 21 38.39 Exon 0 0 - 547 21 38.39 0 0 -
2P13928427 502 21 41.83 _ 0 0 - 336 15 44.64 166 6 36.14
2P21022460 538 11 20.45 _ 0 0 - 538 11 20.45 0 0 -
2P25198627 454 12 26.43 _ 128 7 54.69 326 5 15.34 0 0 -
2P26819388 535 22 41.12 Exon 0 0 - 535 22 41.12 0 0 -
2P29538734 541 36 66.54 Exon 190 12 63.16 351 24 68.38 0 0 -
2P30446231 475 28 58.95 _ 216 15 69.44 259 13 50.19 0 0 -
2P32507721 463 16 34.56 _ 0 0 - 463 16 34.56 0 0 -
2P33532337 459 9 19.61 _ 0 0 - 459 9 19.61 0 0 -
2P33506778 536 6 11.19 Exon 0 0 - 536 6 11.19 0 0 -
2P35391362 449 19 42.32 _ 108 6 55.56 341 13 38.12 0 0 -
2P36235952 519 29 55.88 Exon 141 8 56.74 378 21 55.56 0 0 -
16 7895 318 40.28   1120 60 53.57 6423 244 37.99 352 14 39.77