From: Accuracy of genome-wide imputation in Braford and Hereford beef cattle
Panel | FImpute | Beagle | ||||
---|---|---|---|---|---|---|
NE-P | NNE-P | NE-NP | NNE-NP | NE-NP | NNE-NP | |
Imputation to the 50K SNP panel 3 | ||||||
3K | 2 | 6 | 41 | 39 | 2280 | 2131 |
6K | 3 | 7 | 46 | 45 | 828 | 772 |
8K | 3 | 7 | 45 | 45 | 808 | 656 |
15K | 3 | 9 | 48 | 48 | 328 | 317 |
20K | 3 | 7 | 37 | 42 | 708 | 622 |
Imputation to the 777K SNP panel 4,5 | ||||||
3K | 16 (17,24) | - | 4 (5,8) | - | 64 (224,41) | - |
6K | 17 (23,24) | - | 4 (19,21) | - | 49 (238,33) | - |
8K | 17 (23,24) | - | 3 (20,23) | - | 45 (177,34) | - |
15K | 15 (24,23) | - | 8 (20,23) | - | 40 (127,42) | - |
20K | 17 (23,23) | - | 9 (20,23) | - | 44 (161,42) | - |
50K | 3 | - | 11 | - | 29 | - |
90iK | 17 | - | 11 | - | 25 | - |
90tK | 17 | - | 10 | - | 33 | - |