Identification of gene co-expression clusters in liver tissues from multiple porcine populations with high and low backfat androstenone phenotype

Sahadevan, Sudeep; Tholen, Ernst; Große-Brinkhaus, Christine; Schellander, Karl; Tesfaye, Dawit; Hofmann-Apitius, Martin; Cinar, Mehmet Ulas; Gunawan, Asep; Hölker, Michael; Neuhoff, Christiane

doi:10.1186/s12863-014-0158-8

Table 2 Significant clusters in LA and HA co-expression networks

From: Identification of gene co-expression clusters in liver tissues from multiple porcine populations with high and low backfat androstenone phenotype

Cluster Id	#Genes	Significance (p-value)	DuF2 cor. coeff. (mean ± sd)	Duroc cor. coeff. (mean ± sd)	Landrace cor. coeff. (mean ± sd)
LA 0	478	0.00216	0.758 ± 0.138	0.850 ± 0.115	0.625 ± 0.090
LA 1	316	0.00267	0.742 ± 0.135	0.832 ± 0.122	0.622 ± 0.091
LA 2	134	0.0076	0.776 ± 0.139	0.672 ± 0.100	0.596 ± 0.075
LA 3	116	0.02248	0.741 ± 0.133	0.849 ± 0.111	0.630 ± 0.089
LA 4	96	0.04911	0.773 ± 0.139	0.666 ± 0.101	0.600 ± 0.074
LA 6	86	0.01046	0.793 ± 0.149	0.714 ± 0.108	0.600 ± 0.070
LA 7	87	0.0203	0.736 ± 0.143	0.724 ± 0.115	0.582 ± 0.063
LA 8	72	0.0379	0.765 ± 0.134	0.707 ± 0.132	0.587 ± 0.069
LA 9	68	0.01526	0.765 ± 0.149	0.610 ± 0.081	0.605 ± 0.084
LA 11	61	0.01415	0.729 ± 0.141	0.663 ± 0.126	0.662 ± 0.096
LA 12	40	0.04167	0.739 ± 0.125	0.622 ± 0.085	0.598 ± 0.074
LA 14	39	0.00594	0.736 ± 0.139	0.700 ± 0.116	0.610 ± 0.076
LA 15	30	0.04776	0.768 ± 0.138	0.641 ± 0.104	0.592 ± 0.065
LA 17	21	0.01309	0.748 ± 0.139	0.676 ± 0.131	0.612 ± 0.077
LA 18	28	0.00258	0.749 ± 0.134	0.661 ± 0.117	0.591 ± 0.075
LA 19	20	0.00408	0.726 ± 0.122	0.679 ± 0.100	0.622 ± 0.080
LA 21	21	0.01807	0.758 ± 0.140	0.746 ± 0.107	0.620 ± 0.084
HA 0	616	0.03963	0.780 ± 0.139	0.704 ± 0.115	0.663 ± 0.102
HA 1	75	0.0166	0.812 ± 0.132	0.598 ± 0.077	0.668 ± 0.106
HA 3	23	0.0023	0.815 ± 0.128	0.612 ± 0.081	0.679 ± 0.109
HA 4	18	0.00095	0.826 ± 0.117	0.597 ± 0.065	0.622 ± 0.079
HA 10	207	0.00203	0.770 ± 0.137	0.741 ± 0.116	0.681 ± 0.114
HA 11	22	0.01025	0.773 ± 0.125	0.775 ± 0.098	0.656 ± 0.103
HA 12	13	0.01196	0.776 ± 0.138	0.747 ± 0.105	0.660 ± 0.090
HA 14	75	0.00429	0.750 ± 0.141	0.611 ± 0.086	0.685 ± 0.100
HA 17	40	0.01279	0.821 ± 0.133	0.637 ± 0.088	0.619 ± 0.085
HA 18	25	0.02743	0.770 ± 0.136	0.776 ± 0.094	0.735 ± 0.101
HA 19	25	0.02149	0.767 ± 0.128	0.604 ± 0.080	0.680 ± 0.106
HA 22	11	0.04384	0.744 ± 0.136	0.677 ± 0.121	0.689 ± 0.105

This table contains information on significant clusters generated from LA and HA co-expression networks.

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