First GWAS SNP | Second GWAS SNP | FORCE | PLINK FastEpistasis | |||
---|---|---|---|---|---|---|
rs number | Chromosomal location | rs number | Chromosomal location | I OR | Empirical p-value | p-value |
rs10484554 | 6p21.33 | rs27524 | 5q15 | 6.846 | 0.008882 | 0.003095 |
rs10484554 | 6p21.33 | rs3134792 | 6p21.33 | 1.068 | 0.3014 | 0.007746 |
rs2201841 | 1p31.3 | rs3213094 | 5q33.3 | 4.737 | 0.02952 | 0.012373 |
rs3134792 | 6p21.33 | rs4795067 | 17q11 | 3.188 | 0.07419 | 0.012783 |
rs20541 | 5q31 | rs17716942 | 2q24 | 6.987 | 0.008212 | 0.013389 |
rs702873 | 2p16 | rs4795067 | 17q11 | 3.414 | 0.06466 | 0.014129 |
rs10484554 | 6p21.33 | rs4795067 | 17q11 | 2.597 | 0.1071 | 0.018096 |
rs610604 | 6q23 | rs17716942 | 2q24 | 6.591 | 0.01025 | 0.023261 |
rs3213094 | 5q33.3 | rs12580100 | 12q13.2 | 5.132 | 0.02349 | 0.028993 |
rs4649203 | 1p36 | rs240993 | 6q21 | 2.270 | 0.1319 | 0.037791 |
rs4649203 | 1p36 | rs702873 | 2p16 | 1.237 | 0.266 | 0.041136 |
rs3134792 | 6p21.33 | rs27524 | 5q15 | 11.840 | 0.000581 | 0.041483 |
rs702873 | 2p16 | rs2546890 | 5q33.3 | 0.804 | 0.37 | 0.041729 |
rs27524 | 5q15 | rs17716942 | 2q24 | 5.280 | 0.02158 | 0.045812 |
rs610604 | 6q23 | rs6701216 | 1q21 | 4.289 | 0.03837 | 0.057701 |
rs2201841 | 1p31.3 | rs2546890 | 5q33.3 | 2.587 | 0.1077 | 0.059206 |
rs27524 | 5q15 | rs7993214 | 13q14.11 | 3.596 | 0.05793 | 0.059609 |
rs3134792 | 6p21.33 | rs3213094 | 5q33.3 | 2.610 | 0.1062 | 0.072999 |
rs702873 | 2p16 | rs2201841 | 1p31.3 | 1.669 | 0.1964 | 0.083717 |
rs10484554 | 6p21.33 | rs12580100 | 12q13.2 | 2.535 | 0.1113 | 0.086631 |
rs4649203 | 1p36 | rs6701216 | 1q21 | 3.518 | 0.06072 | 0.086671 |
rs2201841 | 1p31.3 | rs27524 | 5q15 | 1.666 | 0.1968 | 0.088785 |
rs4112788 | 1q21.3 | rs7993214 | 13q14.11 | 1.546 | 0.2137 | 0.090419 |
rs240993 | 6q21 | rs7993214 | 13q14.11 | 1.896 | 0.1685 | 0.096038 |
rs6701216 | 1q21 | rs8016947 | 14q13 | 1.087 | 0.2971 | 0.100508 |