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Table 1 MQTL for grain zinc and iron concentration in rice identified by meta-analysis

From: Comparative mapping combined with homology-based cloning of the rice genome reveals candidate genes for grain zinc and iron concentration in maize

MQTL

Chr.

Position (cM)

QTL region

Closest maker

AIC

QTL model

No. of initial QTL

Mean phenotypic variance of the QTL

Mean initial QTL CI (cM)

MQTL CI (95%) (cM)

Physical distance (bp)

Related trait

rMQTL1.1

1

76.17

RM600-RM5638

RM3412

97.82

4

2

6.72

27.08

17.47

9,464,568-20,936,057

Zn

rMQTL1.2

1

122.71

RM246-RM403

RM443

  

5

12.59

28.76

12.40

27,336,316-29,385,871

Zn, Fe

rMQTL1.3

1

175.87

RM1198-RM104

RM431

  

2

12.57

17.58

12.43

37,603,776-40,168,103

Zn, Fe

rMQTL2.1

2

14.12

RM110-RM3732

RM211

75.33

4

3

9.32

28.42

12.90

1,326,951-4,407,973

Zn, Fe

rMQTL2.2

2

51.26

RM555-RM550

RG437

  

2

13.60

30.95

20.66

4,305,688-12,464,529

Fe, P

rMQTL2.3

2

129.86

Pal1-RM599

RM263

  

2

11.69

19.69

13.92

24,973,386-27,115,300

Zn

rMQTL3.1

3

29.33

RM231-RM1022

RM489

83.49

4

2

8.79

38.55

16.97

2,454,089-7,233,990

Zn, PA

rMQTL3.2

3

58.28

RM546-RM218

RM7425

  

2

12.31

30.50

15.06

6,164,117-8,406,578

Zn

rMQTL3.3

3

179.73

RM168-RM5813

RM3919

  

3

11.02

18.73

7.68

28,098,585-30,981,264

Zn, Fe

rMQTL4.1

4

152.34

RM348-RM559

RM280

33.37

3

2

8.23

33.55

17.33

32,835,501-35,336,879

Zn

rMQTL5.1

5

72.11

RM516-RZ649

RM3437

29.84

2

2

8.41

29.33

17.91

8,304,202-19,608,342

Zn, PA

rMQTL5.2

5

107.85

RM3476-RM178

RM233B

  

2

24.30

16.91

11.96

23,906,571-25,164,524

PA

rMQTL6.1

6

56.64

RM539-RG424

RM527

109.12

4

3

9.13

46.55

19.61

8,170,581-19,814,539

Zn, Fe, P

rMQTL6.2

6

138.25

RM30-RM345

RM461

  

6

8.39

47.61

11.86

27,253,297-30,865,997

Zn, Fe, PA

rMQTL7.1

7

37.91

RM501-RM432

RM533

76.23

3

4

8.91

21.93

9.41

8,006,856-18,959,778

Zn, Fe

rMQTL7.2

7

76.47

RM3691-RM234

RM351

  

2

8.20

37.38

17.09

19,226,136-25,473,814

Zn

rMQTL7.3

7

100.73

RM478-RM1357

RZ978

  

3

9.85

24.15

13.62

25,950,515-28,852,240

Zn, Fe

rMQTL8.1

8

27.71

RM1235-RM1376

RM38

95.34

4

3

13.68

19.77

10.19

1,209,754-3,169,069

Zn

rMQTL8.2

8

47.86

RM4085-RM25

RM1111

  

4

15.85

17.51

8.60

4,450,273-4,378,594

Zn, Fe, P

rMQTL8.3

8

66.44

RM547-RM339

RM483

  

3

10.30

21.71

12.21

5,92,402-17,945,202

Zn, Fe

rMQTL9.1

9

81.06

RM242-RM5786

RM201

26.17

2

3

11.23

28.33

15.39

18,811,120-20,482,666

Zn, Fe, P

rMQTL12.1

12

104.78

RM270-RM12

RG958

40.16

3

3

10.51

39.17

20.32

25,002,547-26,988,436

Zn, Fe

  1. AIC = Akaike Information Criterion, CI = confidence interval, cM = centiMorgan, bp = base pair.