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Table 6 Correlation coefficient for estimated relationships and inbreeding coefficients (based on similarities)

From: The effect of rare alleles on estimated genomic relationships from whole genome sequence data

 

Estimated relationships

Inbreeding coefficients

 

First degree

Second degree

Less-related

Depth1

Depth2

Depth4

A ped ~ G SNP5+

0.703a,b

0.531a,b

0.698a,b

0.474a,b

0.618a,b

0.665a,b

A ped ~ G WGS5+

0.618a,b

0.508a,b

0.633a,b

0.394a,b

0.544a,b

0.616a,b

G WGS5+ ~ G SNP5+

0.936a,b

0.935a,b

0.916a,b

0.928a,b

0.950a,b

0.962a,b

A ped ~ G SNP1+

0.700a,b

0.542a,b

0.707a,b

0.484a,b

0.622a,b

0.660a,b

A ped ~ G WGS1+

0.610a,b

0.551a,b

0.660a,b

0.425a,b

0.565a,b

0.601a,b

G WGS1+ ~ G SNP1+

0.915a,b

0.909a,b

0.905a,b

0.914a,b

0.934a,b

0.947a,b

A ped ~ G SNP1_5

0.259b

0.286a,b

0.474a,b

0.269a,b

0.269a,b

0.237b

A ped ~ G WGS1_5

0.222b

0.277a,b

0.423a,b

0.242a,b

0.248b

0.201b

G WGS1_5 ~ G SNP1_5

0.869a,b

0.791a,b

0.813a,b

0.782a,b

0.697a,b

0.666a,b

G SNP1+ ~ G SNP5+

0.994a

0.996a

0.995a

0.996a

0.998a

0.999a

G WGS1+ ~ G WGS5+

0.922a,b

0.947a,b

0.949a,b

0.960a,b

0.970a,b

0.983a,b

G SNP5+ ~ G SNP1_5

0.346a,b

0.260a,b

0.521a,b

0.280a,b

0.307a,b

0.508a,b

G WGS5+ ~ G WGS1_5

0.194b

0.115b

0.398a,b

0.195a,b

0.185b

0.367a,b

G SNP1+ ~ G SNP1_5

0.449a,b

0.343a,b

0.603a,b

0.362a,b

0.365 a,b

0.543a,b

G WGS1+ ~ G WGS1_5

0.559a,b

0.427a,b

0.668a,b

0.462a,b

0.417a,b

0.533a,b

  1. a,bwhere ameans significantly different from 0 and bsignificantly different from 1 (P-value ≤0.05).