Genome-wide association studies (GWAS) identify a QTL close to PRKAG3 affecting meat pH and colour in crossbred commercial pigs

Table 4 The candidate or nearest genes to the significant SNPs in the region on SSC15

SNP_ID	SNP position	Ensembl gene ID	Gene start	Gene end	Gene name	Distance (bp)
9	133269167	ENSSSCG00000016182	133249206	133268676	RUFY4	492
12	133382636	ENSSSCG00000016185	133377438	133389903	ARPC2	Exon 3
13	133427999	ENSSSCG00000016186	133425398	133432043	TMBIM1 ^#	Intron 9
14	133456604	ENSSSCG00000025058	133452329	133456736	NRAMP1	Exon 4
16	133493709	ENSSSCG00000016196	133479159	133507423	VIL1	Intron 10
20	133677385	ENSSSCG00000016191	133667702	133729988	ZNF142 ^#	Intron 2
21	133738342	ENSSSCG00000016191	133667702	133729988	ZNF142 ^#	8,354
		ENSSSCG00000026964	133753315	133852318	STK36 ^#	−14,973
		ENSSSCG00000016201	133768369	133815768	TTLL7 ^#	−30,027
		ENSSSCG00000016200	133800248	133807019	PRKAG3	−61,906
24	133929898	ENSSSCG00000021584	133925849	133927094	CDK5R2	2,804
27	133964455	ENSSSCG00000021584	133925849	133927094	CDK5R2	37,361

^#unknown genes in Sus scrofa, the names in the table are their orthologues in other species.

ISSN: 2730-6844