Table 4 Chromosome wide significant associations identified in subset B2 for boar taint and testes size parameters
Trait 1 | SNP | SSC 2 | Pos 3 | Mut 4 | MAF 5 | eEff (se) 6 | Chi2 | Emp. P-value 7 | Var 8 |
|---|---|---|---|---|---|---|---|---|---|
lnAND | M1GA0008473 | 6 | 30900258 | C/A | 0.18 | −0.11 (0.03) | 13.61 | 1.78E-05* | 3.71% |
lnAND | ALGA0106517 | NA | NA | A/G | 0.43 | 0.09 (0.02) | 15.27 | 5.50E-06# | 4.14% |
lnSKA | DIAS0002096 | 7 | 22743118 | C/A | 0.03 | 0.30 (0.08) | 15.12 | 1.19E-05* | 4.10% |
lnSKA | M1GA0014109 | 10 | 49859018 | G/A | 0.52 | 0.12 (0.03) | 18.79 | 1.04E-06*** | 5.05% |
lnSKA | ASGA0074339 | 16 | 78560312 | A/G | 0.27 | 0.11 (0.03) | 13.72 | 3.01E-05* | 3.73% |
lnSKA | ASGA0098123 | NA | NA | G/A | 0.51 | 0.12 (0.03) | 18.74 | 1.08E-06# | 5.04% |
lnIND | ASGA0068236 | 14 | 151808771 | G/A | 0.16 | 0.10 (0.02) | 15.72 | 5.43E-06* | 4.25% |
lnIND | M1GA0020074 | 14 | 152454616 | A/C | 0.23 | 0.09 (0.02) | 17.84 | 1.27E-06** | 4.80% |
lnIND | MARC0028756 | 14 | 152480709 | A/G | 0.23 | 0.09 (0.02) | 17.84 | 1.27E-06** | 4.80% |
lnIND | MARC0102391 | 14 | 153374972 | A/G | 0.29 | 0.08 (0.02) | 15.43 | 6.64E-06** | 4.37% |
lnIND | SIRI0000194 | 14 | 153477507 | A/G | 0.30 | 0.08 (0.02) | 16.02 | 4.44E-06** | 4.33% |
lnIND | ASGA0068311 | 14 | 153593360 | A/G | 0.30 | 0.08 (0.02) | 16.02 | 4.44E-06** | 4.33% |
width | ALGA0060242 | 11 | 1386376 | A/G | 0.07 | 1.03 (0.28) | 13.81 | 1.33E-05** | 3.78% |
length | MARC0003381 | NA | NA | A/G | 0.42 | −0.78 (0.18) | 17.38 | 8.64E-07# | 4.71% |
weight | M1GA0015162 | 11 | 66901762 | A/G | 0.50 | 0.0026 (0.006) | 10.44 | 2.34E-05* | 2.88% |
weight | MARC0003381 | NA | NA | A/G | 0.42 | −0.0022 (0.006) | 12.85 | 2.68E-06# | 3.51% |
GSI | ASGA0025083 | 5 | 23646360 | A/G | 0.31 | −4.68E-05 (1.31E-05) | 12.84 | 1.57E-05* | 3.51% |
GSI | ALGA0113147 | 15 | 171405 | A/G | 0.15 | 6.22E-05 (1.71E-05) | 13.17 | 1.22E-05* | 3.60% |
GSI | MARC0003381 | NA | NA | A/G | 0.42 | −5.00E-05 (1.20E-05) | 17.34 | 5.20E-07# | 4.68% |