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Table 1 Number of records for calving and body conformation traits; lead SNPs associated with traits in single marker analyses

From: Loci associated with adult stature also affect calf birth survival in cattle

Trait

Trait abbreviation

Number of records

Highest significant SNP

   

rs-ID

Position (bp)

MAF

-log 10 (p-value)

Effect ± SE

Stature

ST

3926

rs111018320

38133743

0.40

81.9

4.0 ± 0.2

Body depth

BD

3379

NA

38229392

0.26

26.6

3.2 ± 0.3

Chest width

CW

3379

rs381402811

38196678

0.26

35.7

3.9 ± 0.3

Dairy form

DF

3378

rs43454966

40236966

0.25

11.8

1.8 ± 0.3

Top line

TL

2814

NA

37536932

0.17

6.5

−1.8 ± 0.3

Rump width

RW

3380

NA

39078732

0.22

37.8

3.9 ± 0.3

Rump angle

RA

3380

rs110132087

40335653

0.39

11.3

−1.7 ± 0.3

Service sire calving ease in first lactation

SCEF

4631

rs109301655

38956499

0.08

80.2

−6.4 ± 0.3

Service sire calving ease in later lactations

SCEL

4631

rs109301655

38956499

0.08

83.8

−7.3 ± 0.4

Service sire stillbirth in first lactation

SSBF

4631

NA

38700703

0.22

56.6

−4.2 ± 0.3

Service sire stillbirth in later lactations

SSBL

4631

NA

38700703

0.22

34.7

−3.3 ± 0.3

Calf size in first lactation (service sire effect)

SCSF

4631

rs109301655

38956499

0.08

88.7

6.1 ± 0.3

Calf size in later lactations (service sire effect)

SCSL

4631

rs109301655

38956499

0.08

106.0

6.4 ± 0.3

Service sire calving index

SCI

4631

NA

38700703

0.22

57.9

−4.3 ± 0.3

Body conformation index

BCI

3371

NA

38914033

0.22

80.4

5.0 ± 0.3

  1. rs-ID = reference SNP identification; MAF = minor allele frequency; effect = allele substitution effect for the SNP; SE = SE for the SNP effect; NA = not available.