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Table 3 QTL regions for the daily feed intake and average daily weight trajectory parameters

From: Genome-wide association study on legendre random regression coefficients for the growth and feed intake trajectory on Duroc Boars

Trait Coefficient SSR1 Region1 (Start – End) Reference SNP ID number Location1 SNP with largest Impact2 Candidate gene (Gene Start - Stop)1 Function
Daily Feed Intake Intercept 3 104.93 – 106.74 rs81374365 105,694,951   
6 50.80 – 53.37 rs80971368 51,843,873 SIGLEC-5 (51.50 – 51.83) Host Immune Response
7 8.39 – 9.65 rs80858822 9,162,386 EDN1 (9.15 – 9.16) Vasoconstriction & Kidney Functions
8 30.60 – 31.03 rs81399022 30,934,915 TBC1D1 (31.01 – 31.05) Energy Homoestasis
9 8.78 – 9.38 rs331988332 8,950,525 UCP2 (9.15 – 9.16) UCP3 (9.17 – 9.18) Energy Homoestasis
9 65.35 – 66.81 rs81412363 66,001,271   
9 146.99 – 147.55 rs81344419 147,145,126   
11 78.00 – 78.81 rs81431902 78,262,842 TPP2 (78.24 – 78.32) Anti-Satiety & Adipogenesis
14 16.41 – 17.22 rs80800316 16,678,119 GLRA3 (16.70 – 16.78) Behavior
15 131.44 – 132.17 rs81454578 131,788,807 IGFBP5 (131.68 – 131.68) Glucose Homeostasis
Linear 2 124.53 – 125.09 rs81474570 124,815,799 CDO1 (124.82 – 124.83) Cysteine homeostasis
3 138.21 – 140.07 rs81336457 138,955,525   
4 37.09 – 37.74 rs80849862 37,210,968 AZIN1 (37.09 – 37.74) Polyamine Synthesis Regulation
Quadratic 1 25.01 – 27.47 rs80803840 25,469,368 GPR126 (25.29 – 25.41) Cell Signaling
Average Daily Body Weight Intercept 1 176.19 – 177.76 rs80837663 176,186,716 PHLPP1 (176.12 – 176.23) MC4R (178.55 – 178.56) Insulin Signaling Regulation of Metabolism
4 44.24 – 46.14 rs80840184 44,687,188 NDUFAF6 (44.87 – 44.91) Energy Homoestasis
7 125.06 – 125.99 rs80927576 125,383,498 VRK1 (125.27 – 125.31) Cell Growth & Division
9 65.08 – 65.86 rs81412302 65,728,425   
11 9.07 – 9.61 rs80786591 9,216,774   
15 23.81 – 26.38 rs81451849 24,623,255   
Linear 5 84.01 – 84.74 rs81325400 84,361,428 STAB2 (84.23 – 84.26) Clearing of Metabolic Waste
Quadratic 1 17.42 – 18.35 rs80807545 17,637,973   
4 82.08 – 82.89 rs80787131 82,154,248 IMPAD1 (82.11 – 82.13) Formation of Skeletal Elements
6 100.55 – 106.32 rs81316981 100,548,492 CABLES1 (100.63 – 100.80) Regulator of Cell Proliferation
12 52.69 – 53.31 rs81327396 53,063,765   
15 9.03 – 10.57 rs80840353 10,127,793 KYNU (9.03 – 10.57) Tryptophan Metabolism
  1. 1Location of SNP in megabases based on swine genome build 10.2
  2. 2The impact of a particular SNP within a given regions was determine by calculating the SNP variance (2pq (SNP Effect)2)