From: Fast imputation using medium or low-coverage sequence data
Reference population size | Sequence read depth | Error rate (%) | |||||||
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4 | 16 | ||||||
Percentage correct | Correlation | Percentage correct | Correlation | Percentage correct | Correlation | Percentage correct | Correlation | ||
500 | 16× | 98.4 | 0.978 | 98.4 | 0.977 | 98.3 | 0.976 | 97.8 | 0.969 |
8× | 98.2 | 0.975 | 98.1 | 0.974 | 98.0 | 0.972 | 96.9 | 0.956 | |
4× | 96.8 | 0.956 | 96.7 | 0.954 | 96.8 | 0.955 | 95.4 | 0.934 | |
2× | 94.7 | 0.925 | 94.1 | 0.917 | 94.2 | 0.917 | 93.6 | 0.909 | |
1× | 90.9 | 0.869 | 89.8 | 0.853 | 90.0 | 0.855 | 90.0 | 0.855 | |
1000 | 16× | 99.3 | 0.990 | 99.2 | 0.989 | 99.2 | 0.989 | 98.9 | 0.984 |
8× | 99.2 | 0.988 | 99.1 | 0.987 | 99.0 | 0.986 | 98.0 | 0.972 | |
4× | 98.4 | 0.978 | 98.2 | 0.975 | 98.1 | 0.973 | 96.9 | 0.956 | |
2× | 97.0 | 0.958 | 96.5 | 0.951 | 96.7 | 0.953 | 95.8 | 0.939 | |
1× | 94.8 | 0.925 | 93.8 | 0.911 | 93.9 | 0.912 | 93.4 | 0.903 | |
10,000 | 2× | 97.5 | 0.964 | ||||||
1× | 95.8 | 0.939 |