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Table 1 Number of SNPs in common between LDa panel and the HDb panel

From: Strategies for genotype imputation in composite beef cattle

LD Panel

Label

SNPs in original LD panel

SNPs in common after QCc

Illumina® Bovine 3K

3K

2,900

2,341

Illumina® Bovine LD

6K

6,909

6,280

GGP Beef LD

GGP9K

8,762

7,548

GGP Indicus LD

GGP20Ki

19,721

14,305

Illumina® BovineSNP50

50K

54,609

38,802

GGP Indicus HD

GGP75Ki

74,085

50,038

GGP Beef HD

GGP80K

76,992

67,143

  1. aLD: low-density, bHD: high-density panel, cQC: quality Control