From: Strategies for genotype imputation in composite beef cattle
LD Panel | Label | SNPs in original LD panel | SNPs in common after QCc |
---|---|---|---|
Illumina® Bovine 3K | 3K | 2,900 | 2,341 |
Illumina® Bovine LD | 6K | 6,909 | 6,280 |
GGP Beef LD | GGP9K | 8,762 | 7,548 |
GGP Indicus LD | GGP20Ki | 19,721 | 14,305 |
Illumina® BovineSNP50 | 50K | 54,609 | 38,802 |
GGP Indicus HD | GGP75Ki | 74,085 | 50,038 |
GGP Beef HD | GGP80K | 76,992 | 67,143 |