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Table 1 Characteristics of the SNPs in each of the different breeds

From: Using selection index theory to estimate consistency of multi-locus linkage disequilibrium across populations

Characteristics of the SNPs

HF1

GWH2

MRY3

Number of segregating SNPs

31 483

30 449

31 262

Number of breed-specific SNPs

14

6

3

Average MAF4 of all SNPs

0.279

0.251

0.266

Average MAF4 of segregating SNPs

0.279

0.260

0.268

Number of SNPs with MAF4 ≤ 0.1

4266

6530

5308

Number of SNPs with 0.1 < MAF4 ≤ 0.2

5587

5803

5609

Number of SNPs with 0.2 < MAF4 ≤ 0.3

6558

5745

6623

Number of SNPs with 0.3 < MAF4 ≤ 0.4

7430

6718

6657

Number of SNPs with 0.4 < MAF4 ≤ 0.5

7662

6707

7306

  1. 1 HF Holstein Friesian
  2. 2 MRY Meuse-Rhine-Yssel
  3. 3 GWH Groninger White Headed
  4. 4 MAF Minor allele frequency