Table 4 Average accuracies (s.e.) of genomic prediction using QTL randomly sampled or QTL with low MAF. The results are for different within and across population scenarios with 3 QTL underlying the trait and a heritability of 0.95
Scenario | Reference population | Selection candidates | Average accuracy of genomic prediction (s.e.) | |||
|---|---|---|---|---|---|---|
QTL randomly sampled | QTL with low MAF | |||||
Base | HF1 | HF1 | 0.949 | (0.001) | 0.932 | (0.002) |
1 | HF1 | GWH3 | 0.341 | (0.021) | 0.233 | (0.022) |
2 | HF1 + MRY2 | GWH3 | 0.361 | (0.022) | 0.246 | (0.022) |
3 | HF1 | MRY2 | 0.304 | (0.020) | 0.186 | (0.018) |
4 | HF1 + GWH3 | MRY2 | 0.310 | (0.021) | 0.189 | (0.019) |