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Table 3 Results of GO analysisa

From: Genome-wide association study in Chinese Holstein cows reveal two candidate genes for somatic cell score as an indicator for mastitis susceptibility

Pathway

Hit

Total

P-Value

Q-Value

Gene

List

axon guidance

2

360

0.004

0.357

ARHGAP39;PTK2

GO:0007411

Taxis

2

608

0.012

0.165

ARHGAP39;PTK2

GO:0042330

regulation of small GTPase mediated signal transduction

2

425

0.006

0.247

ARHGAP39;PTK2

GO:0051056

Axonogenesis

2

517

0.009

0.241

ARHGAP39;PTK2

GO:0007409

cell morphogenesis involved in neuron differentiation

2

568

0.010

0.217

ARHGAP39;PTK2

GO:0048667

neuron projection morphogenesis

2

576

0.011

0.179

ARHGAP39;PTK2

GO:0048812

neuron projection development

2

703

0.016

0.101

ARHGAP39;PTK2

GO:0031175

Chemotaxis

2

608

0.012

0.142

ARHGAP39;PTK2

GO:0006935

small GTPase mediated signal transduction

2

676

0.015

0.135

ARHGAP39;PTK2

GO:0007264

cell projection morphogenesis

2

689

0.015

0.126

ARHGAP39;PTK2

GO:0048858

cell part morphogenesis

2

701

0.016

0.118

ARHGAP39;PTK2

GO:0032990

cell morphogenesis involved in differentiation

2

709

0.016

0.095

ARHGAP39;PTK2

GO:0000904

neuron development

2

813

0.021

0.096

ARHGAP39;PTK2

GO:0048666

cell projection organization

2

949

0.028

0.116

ARHGAP39;PTK2

GO:0030030

cell morphogenesis

2

968

0.029

0.115

ARHGAP39;PTK2

GO:0000902

neuron differentiation

2

1008

0.031

0.118

ARHGAP39;PTK2

GO:0030182

cellular component morphogenesis

2

1026

0.032

0.117

ARHGAP39;PTK2

GO:0032989

generation of neurons

2

1088

0.036

0.120

ARHGAP39;PTK2

GO:0048699

Neurogenesis

2

1156

0.040

0.120

ARHGAP39;PTK2

GO:0022008

Locomotion

2

1282

0.049

0.127

ARHGAP39;PTK2

GO:0040011

synaptic transmission

2

702

0.016

0.109

GRIA3;PTK2

GO:0007268

multicellular organismal signaling

2

812

0.021

0.101

GRIA3;PTK2

GO:0035637

cell junction

2

771

0.019

0.104

GRIA3;PTK2

GO:0030054

transmission of nerve impulse

2

791

0.020

0.103

GRIA3;PTK2

GO:0019226

cell-cell signaling

2

1135

0.039

0.120

GRIA3;PTK2

GO:0007267

Nucleolus

2

628

0.013

0.132

C1D;PTK2

GO:0005730

nucleoplasm part

2

862

0.023

0.102

C1D;PTK2

GO:0044451

receptor binding

2

1206

0.044

0.125

C1D;PTK2

GO:0005102

cell differentiation

3

2754

0.033

0.114

ARHGAP39;PTK2;TRAPPC9

GO:0030154

cellular developmental process

3

2928

0.039

0.125

ARHGAP39;PTK2;TRAPPC9

GO:0048869

intracellular non-membrane-bounded organelle

3

3104

0.046

0.126

ARHGAP39;C1D;PTK2

GO:0043232

non-membrane-bounded organelle

3

3104

0.046

0.122

ARHGAP39;C1D;PTK2

GO:0043228

  1. aDerived from GenCLiP 2.0 (http://ci.smu.edu.cn/GenCLiP2.0/analysis.php?random=new)
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BMC Genomic Data

ISSN: 2730-6844

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