Skip to main content

Table 1 Major candidate genes for meat quality detected from positive selection scans (XP-EHH and XP-CLR)

From: Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing

Candidate genes

Chromosome

Window (Mbp)

XP-EHH (B-L)a

XP-EHH (B-Y)b

XP-CLR (B-L)c

XP-CLR (B-Y)d

TG

4

8.075–8.1

6.62E-03

9.01E-03

316.91

512.22

FABP1

3

60.625–60.65

4.37E-03

8.11E-03

343.91

463.03

ERN1

12

14.95–14.975

4.71E-03

2.46E-03

334.99

358.46

ICAM2

12

14.95–14.975

4.71E-03

2.46E-03

334.99

358.46

JPH3

6

1.8–1.825

9.86E-03

7.81E-03

550.37

534.39

TGFBR3

4

136.675–136.7

4.64E-03

4.10E-03

167.01

230.76

GLP2R

12

57.45–57.475

8.35E-03

4.71E-04

177.41

277.77

PPP2R5C

7

129.925–129.95

6.45E-03

7.40E-03

179.71

184.98

AKIRIN2

1

62.775–62.8

6.07E-04

6.08E-03

138.15

120.63

  1. aEmpirical P-value resulting from XP-EHH analysis between Berkshire and Landrace
  2. bEmpirical P-value resulting from XP-EHH analysis between Berkshire and Yorkshire
  3. cXP-CLR score of genomic region between Berkshire and Landrace
  4. dXP-CLR score of genomic region between Berkshire and Yorkshire